View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_27 (Length: 304)
Name: NF8199_high_27
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 54714584 - 54714881
Alignment:
| Q |
1 |
aaaagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttatatctatctat--------atacgtatcaa |
92 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
54714584 |
aaaagcggtaaccctaacgctgaaatccttccatgatcagagattgcggccatggtttgtgtgttatttatatctatctatctatatatatatatatcaa |
54714683 |
T |
|
| Q |
93 |
atcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgcatgtcaaccattcc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54714684 |
atcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcgtgcatgtcaaccattcc |
54714783 |
T |
|
| Q |
193 |
atactcgatttgagaccatgcaatgtgaaggaatatcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcacatgcttgtttct |
292 |
Q |
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|||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54714784 |
atactcgatttgagaccaggcaatgtgaagg---atcacagctatgattgtgaactgaaagtatatatattgattgaaataaattcacatgcttgtttct |
54714880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 54680649 - 54680857
Alignment:
| Q |
84 |
acgtatcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgc--atg |
181 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
54680649 |
acgtatcaaatcaaataaatgtatttatgtgagatgatattgatatctgtatccatttaccggattctcgagtgatttgttggtttgatgcatgcatatg |
54680748 |
T |
|
| Q |
182 |
tcaaccattccatactcgatttgagaccatgcaatgtgaaggaatatcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcaca |
281 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54680749 |
tcaatcattccatactcgatttgagaccatgcaatgtgaagg---atcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcaca |
54680845 |
T |
|
| Q |
282 |
tgcttgtttctt |
293 |
Q |
| |
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|||||||||||| |
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| T |
54680846 |
tgcttgtttctt |
54680857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 54721531 - 54721740
Alignment:
| Q |
4 |
agcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttatatctatctatatacgtatcaaatcaaataaat |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
54721531 |
agcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgt-----atcaaataaat |
54721625 |
T |
|
| Q |
104 |
gtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgcatgtcaacca-ttccatactcgatt |
202 |
Q |
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|||| |||||| || |||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||| |
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| T |
54721626 |
gtgtgtatgtgtga------tgatatctgtattttattgccggattctcgagtaatttg-tggtttgatgcacgcatgtcaaccatttccatactcgatt |
54721718 |
T |
|
| Q |
203 |
tgagaccatgcaatgtgaagga |
224 |
Q |
| |
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|| |||| ||| ||||||||| |
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| T |
54721719 |
cgaaaccaggcattgtgaagga |
54721740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 5297684 - 5297893
Alignment:
| Q |
4 |
agcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttatatctatctatatacgtatcaaatcaaataaat |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
5297684 |
agcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgt-----atcaaataaat |
5297778 |
T |
|
| Q |
104 |
gtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgcatgtcaacca-ttccatactcgatt |
202 |
Q |
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|||| |||||| || ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||| |
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| T |
5297779 |
gtgtgtatgtgtga------tgatatctgtactttattgccggattctcgagtaatttg-tggtttgatgcatgcatgtcaaccatttcgatactcgatt |
5297871 |
T |
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| Q |
203 |
tgagaccatgcaatgtgaagga |
224 |
Q |
| |
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||| |||| ||| ||||||||| |
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| T |
5297872 |
tgaaaccaggcattgtgaagga |
5297893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 5398845 - 5398892
Alignment:
| Q |
21 |
tgaaatccttccttgatcagagattgcggccatggtttgtgtgttatt |
68 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||||||||||| |
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| T |
5398845 |
tgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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