View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8199_high_29 (Length: 298)

Name: NF8199_high_29
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8199_high_29
NF8199_high_29
[»] chr2 (1 HSPs)
chr2 (19-287)||(37785267-37785528)
[»] chr3 (4 HSPs)
chr3 (110-287)||(55429825-55430001)
chr3 (189-287)||(54873663-54873761)
chr3 (19-86)||(54873518-54873585)
chr3 (19-78)||(55430005-55430064)
[»] chr8 (2 HSPs)
chr8 (112-264)||(15918959-15919111)
chr8 (19-86)||(15919130-15919197)
[»] chr4 (2 HSPs)
chr4 (134-294)||(21373745-21373904)
chr4 (189-280)||(36253104-36253194)
[»] chr6 (2 HSPs)
chr6 (189-287)||(7020736-7020834)
chr6 (19-84)||(7020592-7020657)
[»] chr5 (2 HSPs)
chr5 (27-86)||(28906199-28906258)
chr5 (27-86)||(28942594-28942653)
[»] chr1 (1 HSPs)
chr1 (27-86)||(16660646-16660705)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 37785528 - 37785267
Alignment:
Q  19 aattcaggagaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctatttgaacnnnnnnnnnnnnnnnnnnngcagatgat 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||    
T  37785528 aatttaggagaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctatttga------tttttttttttttttgcagatgat 37785435  T
Q  119 tgtcttttgtttactcaagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagttaatattcaa 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  37785434 tgtcttttgtttactcaagctaaatcctcttaagctagaatagtgaaagaggtgttaaagagatttttt-catgcttctggattgaaagttaatattcaa 37785336  T
Q  219 aaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat 287  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37785335 aaatctagattcatgttttatactaatatctctagaaacaaagtgaaaaaatttgtttctattgttcat 37785267  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 110 - 287
Target Start/End: Complemental strand, 55430001 - 55429825
Alignment:
Q  110 gcagatgattgtcttttgtttactcaagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagtt 209  Q
    |||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||        ||||||||||| || ||||||    
T  55430001 gcagatgattgtcttttgtttaatcaagctaaatcctctcaagctagaatagtgaaagaggtcttaaagag-tttttgtcatgcttctgggttaaaagtt 55429903  T
Q  210 aatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat 287  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||  ||||||  |||||| ||||||    
T  55429902 aatattcaaaaatctagattcatatcttatgctaatatctctagaagcaaagtgaataaattttcttctatcgttcat 55429825  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 54873663 - 54873761
Alignment:
Q  189 catgcttctggattgaaagttaatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat 287  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||  ||||||  |||||| ||||||    
T  54873663 catgcttctgggttgaaagttaatattcaaatatctagattcatgtcttctgctaatatctctagaagcaaagtgaataaattttcttctatcgttcat 54873761  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 54873518 - 54873585
Alignment:
Q  19 aattcaggagaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctattt 86  Q
    |||| ||||||||||  |||| || |||||||||||| | ||||||| ||||||||||||||||||||    
T  54873518 aattaaggagaaggttcaatctaatgaatggcatccgataaaaatctccaataatggtccagctattt 54873585  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 55430064 - 55430005
Alignment:
Q  19 aattcaggagaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtcc 78  Q
    |||||||||||||||  |||| || |||||||||||| ||||||||| ||||||||||||    
T  55430064 aattcaggagaaggttcaatctaatgaatggcatccgatcaaaatctccaataatggtcc 55430005  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 15919111 - 15918959
Alignment:
Q  112 agatgattgtcttttgtttactcaagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagttaa 211  Q
    ||||||||| |||||||| |||||||||||||||||| | ||||||||||||||| |||||||| ||||        ||||||||||| |||||||||||    
T  15919111 agatgattgccttttgttcactcaagctaaatcctctcaagctagaatagtgaaacaggtgttagagag-tttttgtcatgcttctgggttgaaagttaa 15919013  T
Q  212 tattcaaaaa-tctagattcatgtcttatactaatatctctagaaacaaagtga 264  Q
    |||| ||||| |||| ||||||||||| | |||||||||||||||| |||||||    
T  15919012 tattaaaaaaatctaaattcatgtcttctgctaatatctctagaaaaaaagtga 15918959  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 15919197 - 15919130
Alignment:
Q  19 aattcaggagaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctattt 86  Q
    ||||| |||||||||  |||| || |||||||||||| |||||||||| |||||||||| ||||||||    
T  15919197 aattctggagaaggttcaatctaatgaatggcatccgatcaaaatctttaataatggtctagctattt 15919130  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 294
Target Start/End: Original strand, 21373745 - 21373904
Alignment:
Q  134 caagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagttaatattcaaaaatctagattcatg 233  Q
    ||||||||||||||  | |||||||||||||||||||||||| ||||        ||||||| ||| |||||||||||||||||||||| ||||||||||    
T  21373745 caagctaaatcctcccaagctagaatagtgaaagaggtgttagagag-tttttgtcatgcttttgggttgaaagttaatattcaaaaatttagattcatg 21373843  T
Q  234 tcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcatctcactc 294  Q
    |||| | |||||||| | |||  ||||||||  ||||||  |||||| |||||| ||||||    
T  21373844 tcttctgctaatatcgcaagaggcaaagtgaataaattttcttctatcgttcatttcactc 21373904  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 36253194 - 36253104
Alignment:
Q  189 catgcttctggattgaaagttaatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctat 280  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||| || | |||||||||||  ||||||| ||||||    
T  36253194 catgcttctgg-ttaaaagttaatattcaaaaatctagattcatgtctaatcctaatatttccaaaaacaaagtgaataaatttgcttctat 36253104  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 7020736 - 7020834
Alignment:
Q  189 catgcttctggattgaaagttaatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat 287  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||| ||| |||||||||  ||||||  |||||| ||||||    
T  7020736 catgcttctgggttgaaagttaatattcagaaatctagattcatgtcttctgctaatatctccagagacaaagtgaataaattttcttctatcgttcat 7020834  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 7020592 - 7020657
Alignment:
Q  19 aattcaggagaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctat 84  Q
    |||||||||||||||  |||| || |||| ||||||| ||||||||| ||||||||||||| ||||    
T  7020592 aattcaggagaaggttcaatctaatgaatagcatccgatcaaaatctccaataatggtccaactat 7020657  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 28906258 - 28906199
Alignment:
Q  27 agaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctattt 86  Q
    ||||||| |||||||||||||| || ||  |||||||||||||||||||| || ||||||    
T  28906258 agaaggtttaatccaacgaatgacacccaatcaaaatcttcaataatggttcaactattt 28906199  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 28942653 - 28942594
Alignment:
Q  27 agaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctattt 86  Q
    ||||||| |||||||||||||| || ||  |||||||||||||||||||| || ||||||    
T  28942653 agaaggtttaatccaacgaatgacacccaatcaaaatcttcaataatggttcaactattt 28942594  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 16660705 - 16660646
Alignment:
Q  27 agaaggtctaatccaacgaatggcatccggtcaaaatcttcaataatggtccagctattt 86  Q
    ||||||| |||||||||||||| || ||  |||||||||||||||||||| || ||||||    
T  16660705 agaaggtttaatccaacgaatgacacccaatcaaaatcttcaataatggttcaactattt 16660646  T

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