View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_31 (Length: 296)
Name: NF8199_high_31
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 38086955 - 38087221
Alignment:
| Q |
19 |
aaattaaagtttaacataattattgtcaagcaaccacttaagactccagttgttagagtcacatttgtaagcccaatatgcccatccaaatgtagctcga |
118 |
Q |
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| T |
38086955 |
aaattaaagtttaacataattattttcaagcaaccacttaagactccagttgttagagtcacatttgtaagcccaatatgcccatccaaatgtagctcga |
38087054 |
T |
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| Q |
119 |
gagtatacctccacttgtaccttcataaattgttgagaatctttctttaaagcattcttaaccttccagtcaccactccattcccctgccaaattccatc |
218 |
Q |
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| T |
38087055 |
gagtatacctccacttgcaccttcataaattgttgagaatctttctttaaagcattcttaaccttccagtcaccactccattcccctgccaaattccatc |
38087154 |
T |
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| Q |
219 |
accgaacattttgttaggttatggcatatgctaattatattttctaaacatttgatgacacaggttc |
285 |
Q |
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| T |
38087155 |
accgaacattttgttaggttatggcatatgctaattatattttctaaacatttgatgacacaagttc |
38087221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 1716992 - 1717054
Alignment:
| Q |
49 |
caaccacttaagactccagttgttagagtcacatttgtaagcccaatatgcccatccaaatgt |
111 |
Q |
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| T |
1716992 |
caaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgt |
1717054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 1753547 - 1753615
Alignment:
| Q |
52 |
ccacttaagactccagttgttagagtcacatttgtaagcccaatatgcccatccaaatgtagctcgaga |
120 |
Q |
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| T |
1753547 |
ccacttgagactccaatggttatattgacatttgtatgcccaataagcccatccaaatgttgcacgaga |
1753615 |
T |
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