View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8199_high_34 (Length: 272)

Name: NF8199_high_34
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8199_high_34
NF8199_high_34
[»] chr8 (12 HSPs)
chr8 (15-192)||(21601816-21601987)
chr8 (19-94)||(28802283-28802359)
chr8 (19-78)||(17488223-17488282)
chr8 (18-96)||(21600667-21600745)
chr8 (20-100)||(6393778-6393857)
chr8 (15-70)||(33508443-33508496)
chr8 (17-100)||(21145663-21145749)
chr8 (20-97)||(33590089-33590167)
chr8 (15-95)||(2987171-2987251)
chr8 (37-89)||(18080187-18080240)
chr8 (20-96)||(1249093-1249169)
chr8 (20-76)||(42442744-42442800)
[»] chr4 (18 HSPs)
chr4 (15-100)||(31903511-31903597)
chr4 (15-100)||(12034376-12034462)
chr4 (15-100)||(17381278-17381364)
chr4 (19-78)||(17381580-17381639)
chr4 (16-98)||(4209767-4209850)
chr4 (19-61)||(4161656-4161698)
chr4 (19-100)||(11840064-11840146)
chr4 (19-102)||(17753250-17753335)
chr4 (15-76)||(46804774-46804835)
chr4 (18-77)||(971863-971922)
chr4 (15-97)||(35255489-35255572)
chr4 (15-61)||(8170987-8171033)
chr4 (32-70)||(36218517-36218555)
chr4 (15-81)||(45615616-45615682)
chr4 (19-99)||(11839763-11839844)
chr4 (30-98)||(30316043-30316112)
chr4 (18-54)||(38080965-38081001)
chr4 (20-100)||(51150832-51150915)
[»] chr1 (13 HSPs)
chr1 (18-100)||(6728025-6728108)
chr1 (19-90)||(10018708-10018779)
chr1 (15-89)||(30519042-30519118)
chr1 (18-79)||(38445198-38445259)
chr1 (15-70)||(19464240-19464295)
chr1 (15-77)||(30050318-30050380)
chr1 (24-100)||(31134759-31134836)
chr1 (22-97)||(38267444-38267520)
chr1 (19-78)||(6541023-6541082)
chr1 (15-76)||(16192270-16192331)
chr1 (22-94)||(36144785-36144858)
chr1 (32-100)||(45392282-45392351)
chr1 (24-76)||(33747288-33747340)
[»] chr7 (14 HSPs)
chr7 (15-94)||(32996528-32996608)
chr7 (19-76)||(12927837-12927894)
chr7 (30-100)||(18942731-18942802)
chr7 (15-78)||(20889444-20889507)
chr7 (25-61)||(1344644-1344680)
chr7 (15-63)||(5358239-5358287)
chr7 (15-86)||(38838672-38838744)
chr7 (18-89)||(39791831-39791902)
chr7 (15-96)||(8062896-8062978)
chr7 (19-77)||(11458888-11458946)
chr7 (15-61)||(12849744-12849790)
chr7 (18-76)||(26904965-26905022)
chr7 (16-61)||(34703663-34703707)
chr7 (30-89)||(29196758-29196818)
[»] chr5 (8 HSPs)
chr5 (19-94)||(6217673-6217749)
chr5 (15-77)||(9607120-9607182)
chr5 (19-99)||(14468765-14468845)
chr5 (22-61)||(27554349-27554388)
chr5 (24-86)||(42420314-42420377)
chr5 (30-60)||(22579545-22579575)
chr5 (19-95)||(16127049-16127126)
chr5 (20-100)||(23159023-23159104)
[»] chr3 (10 HSPs)
chr3 (22-94)||(14984407-14984479)
chr3 (15-100)||(30843830-30843916)
chr3 (19-94)||(22235188-22235263)
chr3 (19-61)||(38989763-38989805)
chr3 (19-100)||(46848400-46848482)
chr3 (22-96)||(50239756-50239830)
chr3 (24-97)||(51889754-51889828)
chr3 (19-98)||(14194953-14195032)
chr3 (19-70)||(31186453-31186504)
chr3 (30-97)||(43837080-43837148)
[»] chr2 (5 HSPs)
chr2 (15-97)||(40124261-40124344)
chr2 (15-70)||(6788512-6788567)
chr2 (22-96)||(20167625-20167700)
chr2 (99-142)||(32827459-32827502)
chr2 (16-59)||(34883934-34883977)
[»] chr6 (6 HSPs)
chr6 (15-76)||(31951850-31951911)
chr6 (20-58)||(27789225-27789263)
chr6 (20-61)||(29920453-29920494)
chr6 (19-98)||(516022-516102)
chr6 (20-95)||(10219536-10219612)
chr6 (5-61)||(20565788-20565844)
[»] scaffold0329 (1 HSPs)
scaffold0329 (19-61)||(6230-6272)
[»] scaffold0086 (1 HSPs)
scaffold0086 (22-89)||(21890-21958)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 21601987 - 21601816
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccattaccccttgatttt-aacatgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21601987 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccattaccccttgattttgaacatgt 21601888  T
Q  114 ttggatgatgtcaattaaaattgactttgtctctactctctacaattgatttcagcttcaagctatgatttgtaacttt 192  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  21601887 ttggatgatgtcaattaaaattgactttg-------tctctacaattgatttcagcttcaagctatgatttgtaacttt 21601816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 28802359 - 28802283
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcag-gaccaaaatgaccatta 94  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| |||||||| ||||    
T  28802359 gactattttaaaattttgatacatcgatggactattgtgactatttgttacacattcagcgactaaaatgactatta 28802283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17488223 - 17488282
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg 78  Q
    |||||||||| ||||| | |||||||| ||||||||||||||| |||||||| |||||||    
T  17488223 gactattttgaaatttcgctacattgagggactattgtgactacttgttacacattcagg 17488282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 21600667 - 21600745
Alignment:
Q  18 agactattttggaattttgatacattgatggactattgtgactatttgttacatattcag-gaccaaaatgaccattacc 96  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |  ||||| |||||| ||||||| |||| ||||||    
T  21600667 agactattttg-aattttgatacattgatggactattatgactaatcattacacattcagagaccaaattgactattacc 21600745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 6393857 - 6393778
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccattacccctt 100  Q
    ||||||||| ||||| |||||||||| |||| ||| |  ||| |||||||| ||||| |||||||||||| ||||||||||    
T  6393857 actattttgaaatttcgatacattga-ggaccattattgctacttgttacacattcatgaccaaaatgactattacccctt 6393778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 33508496 - 33508443
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttaca 70  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||| || |||||    
T  33508496 cagagactattttggaattttgatacatt--tggactattatgactacttcttaca 33508443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 21145663 - 21145749
Alignment:
Q  17 gagactattttggaattttgatacattgatggac--tattgtgactatttgttacatattcagg-accaaaatgaccattacccctt 100  Q
    |||||||||||||||||| ||||| ||||| |||  ||||||| ||| | |||||| ||||||| ||||||||||| |||| |||||    
T  21145663 gagactattttggaatttcgatacgttgatagactatattgtggctactcgttacacattcaggaaccaaaatgactattatccctt 21145749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 33590167 - 33590089
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtgactatttgttacatattcag-gaccaaaatgaccattaccc 97  Q
    ||||||||  |||||| |||||||||  ||||||||||| |||||||| |||||||||  || |||||||| |||||||    
T  33590167 actattttacaattttaatacattgagagactattgtgattatttgttgcatattcagatactaaaatgactattaccc 33590089  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 2987171 - 2987251
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg-accaaaatgaccattac 95  Q
    |||||||||||||  |||||||||||||||| | ||||||||||||| | ||| || ||| ||| ||||||||||| |||||    
T  2987171 cagagactattttaaaattttgatacattga-gaactattgtgactaatcgtttcacatttaggaaccaaaatgactattac 2987251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 18080240 - 18080187
Alignment:
Q  37 atacattgatggactattgtgactatttgttacatattca-ggaccaaaatgac 89  Q
    ||||||||| |||| ||||||||||||||||||| ||| | |||||||||||||    
T  18080240 atacattgaaggaccattgtgactatttgttacacatttagggaccaaaatgac 18080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 1249169 - 1249093
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccattacc 96  Q
    |||||||| ||||||| ||| ||| |  ||||||| ||| |||| |||||||||||| ||| |||||||| ||||||    
T  1249169 actattttagaattttaatagattaagagactattatgattattcgttacatattcatgactaaaatgactattacc 1249093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 42442744 - 42442800
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtgactatttgttacatattca 76  Q
    |||||||||  |||||||||||||||  ||||||||||||||||  ||| |||||||    
T  42442744 actattttgagattttgatacattgaaagactattgtgactattcattatatattca 42442800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 31903511 - 31903597
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcag-gaccaaaatgaccattacccctt 100  Q
    |||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| |||||| |||||||||||||||||||||||    
T  31903511 cagagactattttggaattttgatacgttgagggactattgtaactattcgttacacattcagagaccaaaatgaccattacccctt 31903597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 12034462 - 12034376
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccctt 100  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| | |||| | ||||| ||||||||||||| ||||||||||    
T  12034462 cagagactattttgcaattttgatacattgagggactattgtgactactcgttatacattcagggaccaaaatgactattacccctt 12034376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17381364 - 17381278
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg-accaaaatgaccattacccctt 100  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||| ||| |||| ||||||| ||||||||||| ||||||||||    
T  17381364 cagagacttttttgaaattttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaatgactattacccctt 17381278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17381580 - 17381639
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||    
T  17381580 gactattttggaattttgatacattgagggactattgtgactacttgttactcattcagg 17381639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 4209767 - 4209850
Alignment:
Q  16 agagactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg-accaaaatgaccattacccc 98  Q
    ||||||||||||  |||||||||  ||||||||||||||  | |||||||||||| |||| || ||||||||||| ||||||||    
T  4209767 agagactattttataattttgatttattgatggactattacggctatttgttacaaattctggtaccaaaatgactattacccc 4209850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 4161698 - 4161656
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgacta 61  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  4161698 gactattttgaaattttgatacattgaaggactattgtgacta 4161656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 11840064 - 11840146
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccctt 100  Q
    |||||||||| |||||||||||||||| || |||||| ||||| |  ||||  ||||| ||||||||||||| ||||||||||    
T  11840064 gactattttgaaattttgatacattgagggcctattgcgactactccttacgcattcagggaccaaaatgactattacccctt 11840146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 17753335 - 17753250
Alignment:
Q  19 gactattttggaattttgatacattg-atggactattgtgactatttgttacatattcag-gaccaaaatgaccattaccccttga 102  Q
    |||||||||| ||||||||||||||| |  |||||||||||||| |  |||||||||||| || ||||||||| |||| |||||||    
T  17753335 gactattttgaaattttgatacattgaaatgactattgtgactactcattacatattcagagatcaaaatgactattatcccttga 17753250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 46804835 - 46804774
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattca 76  Q
    |||||||||||||  |||||||||||||||| |||||||||| |||  | ||||||||||||    
T  46804835 cagagactattttaaaattttgatacattgagggactattgtcactgctcgttacatattca 46804774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 971922 - 971863
Alignment:
Q  18 agactattttggaattttgatacattgatggactattgtgactatttgttacatattcag 77  Q
    ||||||||||| ||||||||||||||||  |||||||||||| | | |||||| ||||||    
T  971922 agactattttgaaattttgatacattgaatgactattgtgacaactcgttacaaattcag 971863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 35255489 - 35255572
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattaccc 97  Q
    |||| ||||||||  |||||| |||||||||  |||||||||||||| | |||||||||| | |||||||||| || |||||||    
T  35255489 cagatactattttaaaattttaatacattgagagactattgtgactactcgttacatatttagggaccaaaataactattaccc 35255572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 8170987 - 8171033
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgacta 61  Q
    |||||||||||||| |||||| ||||||||| |||||||| ||||||    
T  8170987 cagagactattttgaaatttttatacattgagggactattatgacta 8171033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 36218555 - 36218517
Alignment:
Q  32 ttttgatacattgatggactattgtgactatttgttaca 70  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  36218555 ttttgatacattgatggactattattactatttgttaca 36218517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 45615682 - 45615616
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcaggacc 81  Q
    |||||||||||||  |||||| |||||||||  |||| |||||||||||  ||||| ||||||||||    
T  45615682 cagagactattttaaaattttaatacattgaaagactgttgtgactattaattacacattcaggacc 45615616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 11839844 - 11839763
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccct 99  Q
    |||||||||| ||||| |||| ||||| ||||||||||| ||| | |||||| |||||  |||||||||| | |||||||||    
T  11839844 gactattttgaaatttcgatatattgagggactattgtggctactcgttacaaattcatagaccaaaatggctattacccct 11839763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 30316043 - 30316112
Alignment:
Q  30 aattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccc 98  Q
    |||||||||||||||| ||||| ||||||||| || ||| | ||||| ||||||| ||||| ||||||||    
T  30316043 aattttgatacattgaaggacttttgtgactacttattatacattcagggaccaatatgactattacccc 30316112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 38080965 - 38081001
Alignment:
Q  18 agactattttggaattttgatacattgatggactatt 54  Q
    ||||||||||  |||||||||||||||||||||||||    
T  38080965 agactattttaaaattttgatacattgatggactatt 38081001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 51150915 - 51150832
Alignment:
Q  20 actattttggaattttgatacattgatggactat--tgtgactatttgttacatattcagg-accaaaatgaccattacccctt 100  Q
    ||||||||  ||||||||||||||||||| ||||  | |||||| |  ||||||||||||| ||||||||||  ||||||||||    
T  51150915 actattttaaaattttgatacattgatggtctattatatgactactccttacatattcaggaaccaaaatgattattacccctt 51150832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 6728025 - 6728108
Alignment:
Q  18 agactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccctt 100  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||| |||||| ||||| |||| |||||||| || |||||||    
T  6728025 agactattttggaattttgattcattgaaggactattgtgactattcgttacacattcagggacgaaaatgactatcacccctt 6728108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 10018779 - 10018708
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgacc 90  Q
    |||||||||  ||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||    
T  10018779 gactattttaaaattttgatacattgatagactattgtgactactggttacatattcaggaacaaaatgacc 10018708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 30519118 - 30519042
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgt-gactatttgttacatattc-aggaccaaaatgac 89  Q
    |||||||||||||| ||||| |||||||| | |||||||||| |||||||||||||| |||| ||||||||||||||    
T  30519118 cagagactattttgaaatttcgatacatttaaggactattgtggactatttgttacacattcaaggaccaaaatgac 30519042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 38445198 - 38445259
Alignment:
Q  18 agactattttggaattttgatacattgatggactattgtgactatttgttacatattcagga 79  Q
    |||||||||| |||||| |||||||| | ||||||||||||||||||||| || ||||||||    
T  38445198 agactattttagaatttcgatacattaaaggactattgtgactatttgttgcacattcagga 38445259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 19464295 - 19464240
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttaca 70  Q
    ||||||| |||||  |||||||||||||||| ||||||||||||||| ||||||||    
T  19464295 cagagaccatttttaaattttgatacattgaaggactattgtgactacttgttaca 19464240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 30050380 - 30050318
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcag 77  Q
    |||||||||||||  |||| ||||||||||| | | |||||||||||||||||||| ||||||    
T  30050380 cagagactattttaaaattatgatacattgaagaattattgtgactatttgttacacattcag 30050318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 31134759 - 31134836
Alignment:
Q  24 ttttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccctt 100  Q
    |||||||||||| |||||||   ||||||| ||||||| | |||||| ||||| ||||||||||||| ||||||||||    
T  31134759 ttttggaatttttatacattttgggactatcgtgactactcgttacacattcagggaccaaaatgactattacccctt 31134836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 38267444 - 38267520
Alignment:
Q  22 tattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattaccc 97  Q
    ||||||| |||||| ||||||||| ||||||||||||| | ||  |||||||| | ||||||||||||| |||||||    
T  38267444 tattttgaaatttttatacattgagggactattgtgaccacttactacatattgagggaccaaaatgactattaccc 38267520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6541082 - 6541023
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg 78  Q
    |||||||| | |||||||||||||| | |||||||| |||||||| |||||| |||||||    
T  6541082 gactatttggaaattttgatacattaaaggactattatgactattcgttacacattcagg 6541023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 16192270 - 16192331
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattca 76  Q
    |||| ||||||||  |||||||||||||||| ||| |||| |||||| |||||||| |||||    
T  16192270 cagaaactattttaaaattttgatacattgaaggaatattatgactacttgttacacattca 16192331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 36144858 - 36144785
Alignment:
Q  22 tattttggaattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgaccatta 94  Q
    |||||||||||||||||||||||   || |||||||| || |  |||||||||| |||||||||||||| ||||    
T  36144858 tattttggaattttgatacattgggagagtattgtgattactcattacatattcaaggaccaaaatgactatta 36144785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 45392351 - 45392282
Alignment:
Q  32 ttttgatacattgatggactattgtgactatttgttacatattcagg-accaaaatgaccattacccctt 100  Q
    |||||||||||||| |||||||| |||||| |  ||||| ||||||| | ||||||||| ||||||||||    
T  45392351 ttttgatacattgagggactattttgactactcattacacattcaggaatcaaaatgactattacccctt 45392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 33747340 - 33747288
Alignment:
Q  24 ttttggaattttgatacattgatggactattgtgactatttgttacatattca 76  Q
    ||||| ||||| |||||||||| | ||||||||||||| |||||||| |||||    
T  33747340 ttttgaaatttcgatacattgaagaactattgtgactacttgttacacattca 33747288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 32996528 - 32996608
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgaccatta 94  Q
    ||||||||||||| |||||||||| |||||| |||||||||| ||||||  ||| | |||| |||||||||||||||||||    
T  32996528 cagagactattttagaattttgatgcattgagggactattgtcactattcattagacattcaaggaccaaaatgaccatta 32996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 12927837 - 12927894
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattca 76  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||| |||| |||||    
T  12927837 gactattttggaattttgatacatcgaaggactattgtgactacttgctacacattca 12927894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 18942802 - 18942731
Alignment:
Q  30 aattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccctt 100  Q
    ||||||||||||||||  ||||||| ||||||||  ||||| ||||| ||||||||||||| ||||||||||    
T  18942802 aattttgatacattgagtgactattatgactattccttacacattcagggaccaaaatgactattacccctt 18942731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 20889444 - 20889507
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg 78  Q
    |||||| ||||||| ||| |||||||||||| ||||||||||| ||| |||||||| |||||||    
T  20889444 cagagattattttgaaatgttgatacattgagggactattgtggctacttgttacacattcagg 20889507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 1344644 - 1344680
Alignment:
Q  25 tttggaattttgatacattgatggactattgtgacta 61  Q
    |||| ||||||||||||||||||||||||||||||||    
T  1344644 tttgaaattttgatacattgatggactattgtgacta 1344680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 5358287 - 5358239
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatt 63  Q
    |||||||||||||  |||||||||||||||| |||||||||| ||||||    
T  5358287 cagagactattttaaaattttgatacattgaaggactattgtaactatt 5358239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 38838672 - 38838744
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaat 86  Q
    |||||||||||||  |||||| |||||||||| || ||||||||||| | |||||| ||||| ||||||||||    
T  38838672 cagagactattttaaaattttaatacattgatagaatattgtgactactcgttacacattcagggaccaaaat 38838744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 39791902 - 39791831
Alignment:
Q  18 agactattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgac 89  Q
    |||||||||||||||||  |||||||||  ||||||||||  ||  ||||||| ||||||||| ||||||||    
T  39791902 agactattttggaatttcaatacattgagagactattgtggttacctgttacacattcaggacgaaaatgac 39791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 8062896 - 8062978
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgaccattacc 96  Q
    |||| ||||||||  |||||| |||||||||  |||||||||||||| | |||||| |||| ||||||||||| || ||||||    
T  8062896 cagatactattttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactattacc 8062978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 11458946 - 11458888
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcag 77  Q
    ||||||||||||| |||| |||||||| |||||||||||  ||||| ||||| ||||||    
T  11458946 gactattttggaactttgctacattgaaggactattgtggttatttattacacattcag 11458888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 12849744 - 12849790
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgacta 61  Q
    |||||||||||||| |||||||||||||| |  ||||||||||||||    
T  12849744 cagagactattttgtaattttgatacattaaaagactattgtgacta 12849790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 26905022 - 26904965
Alignment:
Q  18 agactattttggaattttgatacattgatggactattgtgactatttgttacatattca 76  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| || ||||| |||||    
T  26905022 agactattttgaaattttgatacattgat-gactattatgactaattattacacattca 26904965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 34703707 - 34703663
Alignment:
Q  16 agagactattttggaattttgatacattgatggactattgtgacta 61  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||    
T  34703707 agagactattttaaaattt-gatacattgatggactattgtgacta 34703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 29196818 - 29196758
Alignment:
Q  30 aattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgac 89  Q
    ||||||||||||||||   ||||||||||||||| |||||| |||| ||||||||| ||||    
T  29196818 aattttgatacattgaaaaactattgtgactattcgttacacattcgaggaccaaagtgac 29196758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 6217673 - 6217749
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccatta 94  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||| | |||| ||||| ||||||||||||| ||||    
T  6217673 gactattttgaaattttgatacattgagggactattgtggctattcgctacacattcatggaccaaaatgactatta 6217749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 9607182 - 9607120
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcag 77  Q
    |||||||||||||  |||||||||||||||||||| |||| ||| ||||| || |||||||||    
T  9607182 cagagactattttaaaattttgatacattgatggattattatgagtattttttccatattcag 9607120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 14468845 - 14468765
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgaccattacccct 99  Q
    |||||||||| ||||| ||||||||||| |||||||||  ||||| ||||||||||| |||||||| ||||| |||| ||||    
T  14468845 gactattttgaaatttcgatacattgat-gactattgtagctattcgttacatattcaaggaccaacatgactattatccct 14468765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 27554349 - 27554388
Alignment:
Q  22 tattttggaattttgatacattgatggactattgtgacta 61  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  27554349 tattttagaattttgatacattgaaggactattgtgacta 27554388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 42420377 - 42420314
Alignment:
Q  24 ttttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaat 86  Q
    ||||| ||| |||||||||||| |||| ||| ||||||||||||||| ||||| ||||||||||    
T  42420377 ttttgaaatgttgatacattgagggacgattatgactatttgttacacattcatggaccaaaat 42420314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 22579545 - 22579575
Alignment:
Q  30 aattttgatacattgatggactattgtgact 60  Q
    |||||||||||||||||||||||||||||||    
T  22579545 aattttgatacattgatggactattgtgact 22579575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 16127126 - 16127049
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattac 95  Q
    |||||||||| ||||||||||| ||||  |||||||||||||| |  ||||| ||| | ||||||||||||| |||||    
T  16127126 gactattttgaaattttgatactttgagagactattgtgactactccttacacatttagggaccaaaatgactattac 16127049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 23159104 - 23159023
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccctt 100  Q
    ||||||||  ||||||||||||||||||||||||| | |||| |  ||||| ||||| |||| ||| |||| ||||||||||    
T  23159104 actattttaaaattttgatacattgatggactattataactaatcattacacattcagggactaaagtgactattacccctt 23159023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 14984479 - 14984407
Alignment:
Q  22 tattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccatta 94  Q
    ||||||| ||||| |||| ||||| ||||||||||||||| | |||||| |||||||||||||||||| ||||    
T  14984479 tattttgaaatttcgatatattgagggactattgtgactactcgttacacattcaggaccaaaatgactatta 14984407  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 30843830 - 30843916
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg-accaaaatgaccattacccctt 100  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||| |  ||||| ||||||| |||||| |||| ||||| ||||    
T  30843830 cagagactattttggaattttgatacattaagagactattgtgactactcattacacattcaggaaccaaagtgactattactcctt 30843916  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 22235263 - 22235188
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccatta 94  Q
    |||||||||| |||||| ||||||| | ||||||||||| |||||| ||||| ||| ||||| |||||||| ||||    
T  22235263 gactattttgaaattttaatacattcaaggactattgtggctatttattacacatttaggacaaaaatgactatta 22235188  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 38989805 - 38989763
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgacta 61  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  38989805 gactattttaaaattttgatacattgatggactattgtgacta 38989763  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 46848400 - 46848482
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccctt 100  Q
    |||||||||| |||||||||||||||| | |||||| |||||| |  ||||| ||||| |||||||| |||| ||||||||||    
T  46848400 gactattttgaaattttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactattacccctt 46848482  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 50239830 - 50239756
Alignment:
Q  22 tattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccattacc 96  Q
    |||||| ||||||| ||||| |||  || |||| ||||||||| ||||||||||||||||||||| || ||||||    
T  50239830 tattttagaattttaatacactgagagattattatgactatttattacatattcaggaccaaaataactattacc 50239756  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 51889828 - 51889754
Alignment:
Q  24 ttttggaattttgatacattgatggactattgtgactatttgttacatattcag-gaccaaaatgaccattaccc 97  Q
    ||||||||||||||||||||||  |||||||||||||| |  ||||| |||||| || ||||||||| |||||||    
T  51889828 ttttggaattttgatacattgaaagactattgtgactactccttacacattcagagatcaaaatgactattaccc 51889754  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 14194953 - 14195032
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattcaggaccaaaatgaccattacccc 98  Q
    |||||||||| |||||||||||||| | ||||||||||| ||| | |  ||| |||| ||| ||||||||| ||||||||    
T  14194953 gactattttgaaattttgatacattaaaggactattgtggctactaggcacacattcgggatcaaaatgactattacccc 14195032  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 31186504 - 31186453
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttaca 70  Q
    |||||||||| ||||||||||||||||  ||||||||| |||| ||||||||    
T  31186504 gactattttgaaattttgatacattgaaagactattgtaactacttgttaca 31186453  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 43837148 - 43837080
Alignment:
Q  30 aattttgatacattgatggactattgtgactatttgttacatattcag-gaccaaaatgaccattaccc 97  Q
    ||||||| |||||| | |||||||||||| |||| |||||| |||||| ||| |||||||| |||||||    
T  43837148 aattttggtacatttagggactattgtgattattcgttacacattcagtgactaaaatgactattaccc 43837080  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 40124344 - 40124261
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgaccattaccc 97  Q
    ||||||| |||||  ||||| |||||||| ||||||||||||||||| | |||||| |||| ||||||||| |||| |||||||    
T  40124344 cagagaccattttaaaatttcgatacattaatggactattgtgactactcgttacacattcaaggaccaaagtgactattaccc 40124261  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 6788512 - 6788567
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttaca 70  Q
    |||| ||||||||  ||||||||||||||||  ||||||| |||||||||||||||    
T  6788512 cagaaactattttaaaattttgatacattgaatgactattatgactatttgttaca 6788567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 20167625 - 20167700
Alignment:
Q  22 tattttggaattttgatacattgatggactattgtgactatttgttacata-ttcaggaccaaaatgaccattacc 96  Q
    ||||||| ||||||||| ||||||  |||||||||||||| |||||||| | || | |||||||||||| ||||||    
T  20167625 tattttgcaattttgatgcattgagtgactattgtgactacttgttacacatttaaagaccaaaatgactattacc 20167700  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 32827459 - 32827502
Alignment:
Q  99 ttgattttaacatgtttggatgatgtcaattaaaattgactttg 142  Q
    |||||||| |||||||||||||||||||||| ||||||| ||||    
T  32827459 ttgattttgacatgtttggatgatgtcaattgaaattgattttg 32827502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 34883977 - 34883934
Alignment:
Q  16 agagactattttggaattttgatacattgatggactattgtgac 59  Q
    ||||||||||||  |||||||||||||||| |||||||||||||    
T  34883977 agagactattttaaaattttgatacattgagggactattgtgac 34883934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 31951850 - 31951911
Alignment:
Q  15 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattca 76  Q
    ||||||||||||| |||||||| |||| | || ||||||||| |||| ||||||||||||||    
T  31951850 cagagactattttagaattttgttacaatcatagactattgtaactaattgttacatattca 31951911  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 27789225 - 27789263
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtga 58  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  27789225 actattttagaattgtgatacattgatggactattgtga 27789263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 29920494 - 29920453
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtgacta 61  Q
    ||||||||| |||||||||||||||| ||| |||||||||||    
T  29920494 actattttgaaattttgatacattgaaggattattgtgacta 29920453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 516022 - 516102
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattacccc 98  Q
    |||||||||||||||| |||||||  |   ||| ||||||||| | |||||| ||||| ||||||||||||| ||||||||    
T  516022 gactattttggaatttcgatacatcaagttactgttgtgactactcgttacacattcagggaccaaaatgactattacccc 516102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 10219612 - 10219536
Alignment:
Q  20 actattttggaattttgatacattgatggactattgtgactatttgttacatattca-ggaccaaaatgaccattac 95  Q
    ||||||||| ||||| || ||||| | ||||||||||| ||| | |||||| ||||| ||||||||||||| |||||    
T  10219612 actattttgaaatttcgacacattaagggactattgtggctactcgttacacattcagggaccaaaatgactattac 10219536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 20565788 - 20565844
Alignment:
Q  5 agtggagaagcagagactattttggaattttgatacattgatggactattgtgacta 61  Q
    |||||| || |||||||||||||  || || ||||||||||||||||||| ||||||    
T  20565788 agtggacaatcagagactattttaaaaattcgatacattgatggactattatgacta 20565844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 6272 - 6230
Alignment:
Q  19 gactattttggaattttgatacattgatggactattgtgacta 61  Q
    |||||||||  |||||||||||||||||||||||||| |||||    
T  6272 gactattttaaaattttgatacattgatggactattgggacta 6230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 21890 - 21958
Alignment:
Q  22 tattttggaattttgatacattgatggactattgtgactatttgttacatattcag-gaccaaaatgac 89  Q
    |||||| ||||||||||| |||||  |||||||||||||| || ||| | |||||| ||||||||||||    
T  21890 tatttttgaattttgatatattgaaagactattgtgactacttcttaaacattcagagaccaaaatgac 21958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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