View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8199_high_41 (Length: 251)

Name: NF8199_high_41
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8199_high_41
NF8199_high_41
[»] chr1 (3 HSPs)
chr1 (1-143)||(45484930-45485074)
chr1 (190-247)||(45484123-45484180)
chr1 (164-202)||(45484881-45484919)
[»] chr4 (4 HSPs)
chr4 (13-86)||(43159909-43159983)
chr4 (1-34)||(25474654-25474687)
chr4 (49-85)||(11893401-11893437)
chr4 (44-80)||(25377182-25377217)
[»] chr7 (2 HSPs)
chr7 (48-80)||(47305497-47305529)
chr7 (46-86)||(40234663-40234704)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-86)||(1327-1414)
[»] chr8 (2 HSPs)
chr8 (7-85)||(885745-885824)
chr8 (1-35)||(7299887-7299921)
[»] chr6 (2 HSPs)
chr6 (49-87)||(35044038-35044076)
chr6 (46-86)||(7246640-7246680)
[»] chr3 (2 HSPs)
chr3 (49-89)||(31064479-31064520)
chr3 (48-80)||(34759032-34759064)
[»] chr2 (3 HSPs)
chr2 (1-34)||(43077202-43077235)
chr2 (46-85)||(11009749-11009789)
chr2 (47-83)||(35501506-35501542)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 45485074 - 45484930
Alignment:
Q  1 aagcataaaatatgttattttcattttaaaatttcnnnnnnn-aggttccttaactagtgccccggagcaccggttaacatgacccaagaaa-caaaagg 98  Q
    ||||||||||| ||||||||| |||||||||||||        |||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||    
T  45485074 aagcataaaatgtgttatttttattttaaaatttcttttttttaggttccttaaccagtgccccgaagcaccggttaacatgacccaaaaaaacaaaagg 45484975  T
Q  99 ttagttttgtctcatgggtattggtatccacattttgtcattatt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45484974 ttagttttgtctcatgggtattggtatccacattttgtcattatt 45484930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 45484180 - 45484123
Alignment:
Q  190 ctattctaaaaacttgtaaatatacatacattatacaaaaatgagtttcttctcactc 247  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  45484180 ctatgctaaaaaccagtaaatatacatacattatacaaaaatgagtttcttttcactc 45484123  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 45484919 - 45484881
Alignment:
Q  164 tgagcttttaactaagcctggtttttctattctaaaaac 202  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  45484919 tgagcttttaactaagcttggtttttctattctaaaaac 45484881  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 43159909 - 43159983
Alignment:
Q  13 tgttattttcattttaaaatttcnnnnnnnaggttccttaactagtgccccggag-caccggttaacatgaccca 86  Q
    |||||||||||||||||||||||       |||||| ||||| | |||||||||| |||||||||||||||||||    
T  43159909 tgttattttcattttaaaatttctttttttaggttctttaaccaatgccccggagacaccggttaacatgaccca 43159983  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25474687 - 25474654
Alignment:
Q  1 aagcataaaatatgttattttcattttaaaattt 34  Q
    |||||||||| |||||||||||||||||||||||    
T  25474687 aagcataaaaaatgttattttcattttaaaattt 25474654  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 11893437 - 11893401
Alignment:
Q  49 cttaactagtgccccggagcaccggttaacatgaccc 85  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11893437 cttaaccagtgccccggagcaccggttagcatgaccc 11893401  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 25377182 - 25377217
Alignment:
Q  44 ggttccttaactagtgccccggagcaccggttaacat 80  Q
    ||||||||||||||||||||||| |||||||||||||    
T  25377182 ggttccttaactagtgccccgga-caccggttaacat 25377217  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 47305529 - 47305497
Alignment:
Q  48 ccttaactagtgccccggagcaccggttaacat 80  Q
    |||||||||||||||||||||||||||||||||    
T  47305529 ccttaactagtgccccggagcaccggttaacat 47305497  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 40234663 - 40234704
Alignment:
Q  46 ttccttaactagtgccccgg-agcaccggttaacatgaccca 86  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  40234663 ttccttaaccagtgccccgggagcaccggttaacatgaccca 40234704  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1327 - 1414
Alignment:
Q  1 aagcataaaatatgttattttcattttaaaa-tttcnnnnnnnaggttccttaactagtgcccc-ggagcaccggttaacatgaccca 86  Q
    |||||||||| |||||||||||||||||||| ||||       |||||||||| |  ||||||| || ||||||||||||||||||||    
T  1327 aagcataaaaaatgttattttcattttaaaaatttctttttttaggttccttagcccgtgccccaggggcaccggttaacatgaccca 1414  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 885745 - 885824
Alignment:
Q  7 aaaatatgttattttcattttaaaatttcnnnnnnnaggttccttaactagtgccccg-gagcaccggttaacatgaccc 85  Q
    |||| ||||||||||||||||||||||||       |||||||||||| | ||||||| |  ||||||||||||||||||    
T  885745 aaaaaatgttattttcattttaaaatttccttttttaggttccttaaccactgccccgaggacaccggttaacatgaccc 885824  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7299921 - 7299887
Alignment:
Q  1 aagcataaaatatgttattttcattttaaaatttc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  7299921 aagcataaaatatgttattttcaatttaaaatttc 7299887  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 35044038 - 35044076
Alignment:
Q  49 cttaactagtgccccggagcaccggttaacatgacccaa 87  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  35044038 cttaaccagtgccccggggcaccggttaacatgacccaa 35044076  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 7246640 - 7246680
Alignment:
Q  46 ttccttaactagtgccccggagcaccggttaacatgaccca 86  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  7246640 ttccttaaccagtgccccggagcactagttaacatgaccca 7246680  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 31064520 - 31064479
Alignment:
Q  49 cttaactagtgccccgg-agcaccggttaacatgacccaaga 89  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  31064520 cttaactagtgccccgggagcaccggttaacatgaccaaaga 31064479  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 34759032 - 34759064
Alignment:
Q  48 ccttaactagtgccccggagcaccggttaacat 80  Q
    |||||||||||||||||| ||||||||||||||    
T  34759032 ccttaactagtgccccggtgcaccggttaacat 34759064  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 43077235 - 43077202
Alignment:
Q  1 aagcataaaatatgttattttcattttaaaattt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  43077235 aagcataaaatatgttattttcaatttaaaattt 43077202  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 11009749 - 11009789
Alignment:
Q  46 ttccttaactagtgccccgg-agcaccggttaacatgaccc 85  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  11009749 ttccttaactagtgtcccgggagcaccggttaacatgaccc 11009789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 35501506 - 35501542
Alignment:
Q  47 tccttaactagtgccccggagcaccggttaacatgac 83  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  35501506 tccttaaccagtgctccggagcaccggttaacatgac 35501542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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