View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_42 (Length: 249)
Name: NF8199_high_42
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 43233443 - 43233239
Alignment:
| Q |
12 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
111 |
Q |
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| T |
43233443 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
43233344 |
T |
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| Q |
112 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtatt---gctgatattggacacctaaacaaacttgcatccca |
208 |
Q |
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| T |
43233343 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtattgctgctgatattggacacctaaacaaacttgcatccga |
43233244 |
T |
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| Q |
209 |
aattt |
213 |
Q |
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||||| |
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| T |
43233243 |
aattt |
43233239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 31982982 - 31982922
Alignment:
| Q |
86 |
acttgcaggggtgacaaaattacaattgaaagaaatacatttgatttgaaacatatgagta |
146 |
Q |
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| T |
31982982 |
acttgcaggtgtgacaaagttacaattgaaagaaaaacattagattcaaaacgtatgagta |
31982922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 8024395 - 8024261
Alignment:
| Q |
12 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
111 |
Q |
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| T |
8024395 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
8024296 |
T |
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| Q |
112 |
tgaaagaaatacatttgatttgaaacatatgagta |
146 |
Q |
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||||||||| ||||| |||| |||| |||||||| |
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| T |
8024295 |
tgaaagaaaaacattagattcaaaacgtatgagta |
8024261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 18647618 - 18647484
Alignment:
| Q |
12 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
111 |
Q |
| |
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|||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| | |||||| |||| || |
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| T |
18647618 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
18647519 |
T |
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| Q |
112 |
tgaaagaaatacatttgatttgaaacatatgagta |
146 |
Q |
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||||||||| |||| |||| |||| |||||||| |
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| T |
18647518 |
tgaaagaaaatcattagattcaaaacgtatgagta |
18647484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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