View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8199_high_45 (Length: 239)

Name: NF8199_high_45
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8199_high_45
NF8199_high_45
[»] chr3 (3 HSPs)
chr3 (84-182)||(29183625-29183723)
chr3 (17-83)||(29185041-29185107)
chr3 (180-222)||(29183598-29183640)
[»] chr7 (3 HSPs)
chr7 (53-147)||(40236113-40236207)
chr7 (53-226)||(35376341-35376528)
chr7 (153-226)||(40236237-40236314)
[»] chr6 (2 HSPs)
chr6 (54-135)||(30665357-30665438)
chr6 (180-226)||(30665483-30665529)
[»] chr1 (1 HSPs)
chr1 (181-226)||(46483337-46483382)
[»] chr8 (1 HSPs)
chr8 (153-185)||(44730507-44730539)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 29183723 - 29183625
Alignment:
Q  84 tttaagtacatgatagaagtgaaattgaaagataaagaaggataaaggggaaaagagaataagagaaggatttcattaacatattcaatgccttctttc 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29183723 tttaagtacataatagaagtgaaattgaaagataaagaaggataaaggggaaaagagaataagagaaggatttcattaacatattcaatgccttatttc 29183625  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 29185107 - 29185041
Alignment:
Q  17 tccactttaaaataaaacttgtatactgtaatagatcagagaactaagcaacacaagagaaataatc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29185107 tccactttaaaataaaacttgtatactgtaatagatcagagaactaagcaacacaagagaaataatc 29185041  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 29183640 - 29183598
Alignment:
Q  180 ttcaatgccttatttcccttatataagccttgttcactccttg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29183640 ttcaatgccttatttcccttatataagccttgttcactccttg 29183598  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 40236113 - 40236207
Alignment:
Q  53 cagagaactaagcaacacaagagaaataatctttaagtacatgatagaagtgaaattgaaagataaagaaggataaaggggaaaagagaataaga 147  Q
    |||||||||  |||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40236113 cagagaactcggcaacacaaaggaaataatccttaagtacatgatagaagtgaaattgaaagataaagaaggataaaggggaaaagagaataaga 40236207  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 35376341 - 35376528
Alignment:
Q  53 cagagaactaagcaacacaagagaaataatctttaagtacatgatagaagtgaaattgaaagataaagaaggataaaggggaa-aag-------agaata 144  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   ||||  ||||||||| |||       |||  |    
T  35376341 cagagaactaagcaacacaagagaaataatccttaagtacatgatagaagtgaaattgaaagata---aaggggaaaggggaataagaactatcagagga 35376437  T
Q  145 agagaagga---------tttcattaacatattcaatgccttctttcaatgccttatttcccttatataagccttgttcactccttgatgt 226  Q
     ||||||||         ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||    
T  35376438 ggagaaggagaatcagaatttcattaacatattcaatgccttctttcaatgtcttctttcccttatatatgccttgttctctccttgatgt 35376528  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 40236237 - 40236314
Alignment:
Q  153 atttcattaacatattcaatgccttctttcaatgccttatttccct----tatataagccttgttcactccttgatgt 226  Q
    ||||||||||||||||||||||| ||||||||||| || |||||||    ||||||||||||||||||| ||||||||    
T  40236237 atttcattaacatattcaatgccctctttcaatgctttctttcccttatatatataagccttgttcacttcttgatgt 40236314  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 30665357 - 30665438
Alignment:
Q  54 agagaactaagcaacacaagagaaataatctttaagtacatgatagaagtgaaattgaaagataaagaaggataaaggggaa 135  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  30665357 agagaactaagcaacacaagagaaataatcctcaagtagatgatagaagtgaaattgaaagataaaaaaggataaaggggaa 30665438  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 30665483 - 30665529
Alignment:
Q  180 ttcaatgccttatttcccttatataagccttgttcactccttgatgt 226  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||||    
T  30665483 ttcaatgccttctttcccttatatatgcattgttcactccttgatgt 30665529  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 46483337 - 46483382
Alignment:
Q  181 tcaatgccttatttcccttatataagccttgttcactccttgatgt 226  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
T  46483337 tcaatgccttctttcccttatatatgccttgttcactccttgatgt 46483382  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 44730507 - 44730539
Alignment:
Q  153 atttcattaacatattcaatgccttctttcaat 185  Q
    ||||||||||||||||| |||||||||||||||    
T  44730507 atttcattaacatattccatgccttctttcaat 44730539  T

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