View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_10 (Length: 460)
Name: NF8199_low_10
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 112 - 441
Target Start/End: Complemental strand, 35966391 - 35966069
Alignment:
| Q |
112 |
agatgaataagttggatgtctgagattgaaaccccgatctctgtatgtattatgcattgttccccactaactaaattaagtttacatgaccgaagcaaat |
211 |
Q |
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| T |
35966391 |
agatgaataagttaagtgtctaagattgaaaccccgatctctgcatatattatacattgt-ccatagtaactgaactaagtttacatgaacgaagtaaat |
35966293 |
T |
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| Q |
212 |
aaatacttaacttagaaacaaggaatcaataatagttaaatagtttgatataacaccaacaaactcaataaaatgtcatcaaatcttagagtcaattcaa |
311 |
Q |
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| T |
35966292 |
aaatacttaatttagaaacaaggaatcaataataattaaatagtttgatatgacaccaacaaactcaataaaatgtcatcaaatcttagagtcaattcaa |
35966193 |
T |
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| Q |
312 |
tcgtatacacatgagataatacaacaacaaatatagtggcaagtgttgagcaaatatagtaatgcttcaccaattattattttttgaatggataagggtt |
411 |
Q |
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| T |
35966192 |
tcgtatacacatgagataatacaacaacaaatatagtggc-agtgttgagcaaatatagtaa-----gaccaattattattttttgaatggataagggtt |
35966099 |
T |
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| Q |
412 |
ctcttcttcgttgttctataataaatagat |
441 |
Q |
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| T |
35966098 |
ctcttcttcgtcgttctataataaatagat |
35966069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35966495 - 35966444
Alignment:
| Q |
1 |
taaagattaattcagttgataaaatgttgatttatccacaaatatgaaaatg |
52 |
Q |
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| T |
35966495 |
taaagattaattcagttgataaaatgttgatttacccacaaatatgaaaatg |
35966444 |
T |
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