View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_11 (Length: 454)
Name: NF8199_low_11
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 8067678 - 8067523
Alignment:
| Q |
1 |
agaaacatgaacagagaagtcatgaacaacggttatgatattgtgttggtctttgtccgatttgatatctctgttaggttctctcgtacaaacaaaaaga |
100 |
Q |
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| T |
8067678 |
agaaacatgaacagagaagtcatgaacaacggttatgatattgtgttggtctttgtccgatttgatatctctgttaggttctctcgtacaaacaaaaaga |
8067579 |
T |
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| Q |
101 |
attgagagcacacacatgatcggtcgcttcgatagaaaataagagagagacttgaa |
156 |
Q |
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| T |
8067578 |
attgagagcacacacatgatcggtcgcttcgatagaaaataagagagagacttgaa |
8067523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 8061726 - 8061582
Alignment:
| Q |
291 |
tataagggcagataatgtcaaatataagtatcattgaatgttaagcttcataatagaatcatttttgtgattcaaactaaactaagccattatcttaact |
390 |
Q |
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| T |
8061726 |
tataagggcagataatgtcaaatataagcatcattgaatgatatgcttcataatagaatcatttttgtgattcaaactaaactaagccattatcttaact |
8061627 |
T |
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| Q |
391 |
ttaagctatttcttgctttcttttatgtggatagtacatttagga |
435 |
Q |
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| T |
8061626 |
ttaagctatttcttgctttcttttatgtggatagtacatttagga |
8061582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 8061852 - 8061760
Alignment:
| Q |
165 |
agtttatgccaattattttttaaacatgtctgtccaaaactagtgtcttatgaaagtcacataatgtcaaatgaaattcccaacttccattat |
257 |
Q |
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| T |
8061852 |
agtttatgccaattattttttaaacatgtctgtccaaaactagtgtcttatgaaagtcacataatgtcaaatgaaattcccaaattccattat |
8061760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 352 - 423
Target Start/End: Original strand, 7930820 - 7930892
Alignment:
| Q |
352 |
tttttgtgattc-aaactaaactaagccattatcttaactttaagctatttcttgctttcttttatgtggata |
423 |
Q |
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| T |
7930820 |
tttttgtgattctaaactaaactaagccataatcttaactttaagccatttcttcttttcttttatgtggata |
7930892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 47140115 - 47140061
Alignment:
| Q |
75 |
taggttctctcgtacaaacaaaaagaattgagag---cacacacatgatcggtcg |
126 |
Q |
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| T |
47140115 |
taggttctctcgcacaaacaagaagaattgagagtcacacacacatgatcagtcg |
47140061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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