View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_12 (Length: 447)
Name: NF8199_low_12
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_12 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0063 (1 HSPs) |
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| [»] scaffold1364 (1 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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| [»] scaffold0351 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 6281774 - 6281360
Alignment:
| Q |
15 |
gtgttagagacgaaatatttatcaagtatacacttatgttggttataagctttatttgaattgctgacttatgtctattgctataatggaatggtcttaa |
114 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6281774 |
gtgttagagacgaaatatttatcaagcatacacttatgttggttataaactttatttgaattgctgacttatgtctattgctataatggaatggtcttaa |
6281675 |
T |
|
| Q |
115 |
atcttaattaataagtctgtataaatgttatggattggttcattggttgattggatcttatctataggtgtgtaactgctattgatgggttgcgttgctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6281674 |
atcttaattaataagtctgtataaatgttatggattggttcattggttgattggatcttatctataggtgtgtaactgctattgatgggttgcgttgctg |
6281575 |
T |
|
| Q |
215 |
acatggaagaggtgttggctggcaaggtacggagtcgttgagtgaaaatttataaagtgaatgatggcatatacagttaacatgaatgaatattggtttc |
314 |
Q |
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| T |
6281574 |
acatggaagaggtgttggctggcaaggtacggagtcgttgagtggaaatttataaagtgaatgatggcatatacagttaacatgaatgaatattggtttc |
6281475 |
T |
|
| Q |
315 |
cttcnnnnnnnnntcaatgaatattggtcaattttgaaagatgagcatttatcatagaatattggagggaaaaattacgttgcataatgtttttgctcat |
414 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
6281474 |
cttcaaaaaaaaatcaatgaatattggtcaattttgaaagatgagcatttatcatagaatattggagtgaaaaattacgttgcataatgtttttgctgat |
6281375 |
T |
|
| Q |
415 |
tagggaagtctaaag |
429 |
Q |
| |
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||||||||||||||| |
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| T |
6281374 |
tagggaagtctaaag |
6281360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 54 - 311
Target Start/End: Complemental strand, 6295206 - 6294961
Alignment:
| Q |
54 |
tggttataagctttatttgaattgctgacttatgtctattgctataatggaatggtcttaaatcttaattaataagtctgtataaatgttatggattggt |
153 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||| |||||| |
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| T |
6295206 |
tggttataacctttatttgaattgctgacttatgtctattgctataatgcaatggtcttaaatcttaattactaagtatgtatgaatgtcatggat---- |
6295111 |
T |
|
| Q |
154 |
tcattggttgattggatcttatctataggtgtgtaactgctattgatgggttgcgttgctgacatggaagaggtgttggctggcaaggtacggagtcgtt |
253 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| ||||||||| || ||||| ||| |
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| T |
6295110 |
--attggttaat-ggatcttatctataggtgtgtaactgctattgatgggtttc-----tgacatggaagagatgttcgctggcaagctaaggagtagtt |
6295019 |
T |
|
| Q |
254 |
gagtgaaaatttataaagtgaatgatggcatatacagttaacatgaatgaatattggt |
311 |
Q |
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| T |
6295018 |
gagtgaaaatttataatgtgaatgatgacatatacagttaacatgaatgaatattggt |
6294961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 6294973 - 6294929
Alignment:
| Q |
330 |
aatgaatattggtcaattttgaaagatgagcatttatcatagaat |
374 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
6294973 |
aatgaatattggtcgattatgaaagatgagcatttatcatagaat |
6294929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 451577 - 451714
Alignment:
| Q |
164 |
attggatcttatctataggtgtgtaactgctattgatgggttgcgttgctgacatggaagaggtgttggctggcaaggtacggagtcgttgagtgaaaat |
263 |
Q |
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|||||||||||| ||||||||| |||||||||||||| | | | ||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||| |
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| T |
451577 |
attggatcttatatataggtgtctaactgctattgattgatag-gttgctgacatggaagaggtgtttgttggcaaggtaccaagtagttgagtgaaaat |
451675 |
T |
|
| Q |
264 |
ttataaagtgaatgatggcatatacagttaacatgaatgaata |
306 |
Q |
| |
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| |||||||||||||||| | ||||||| |||||||||||| |
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| T |
451676 |
t--taaagtgaatgatggc--aaacagttagcatgaatgaata |
451714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 96881 - 96936
Alignment:
| Q |
228 |
gttggctggcaaggtacggagtcgttgagtgaaaatttataaagtgaatgatggcata |
285 |
Q |
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||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||| |
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| T |
96881 |
gttggctggcaaggtaccgagtagctgagtgaaaatttat--agtgaatgatggcata |
96936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 50411 - 50329
Alignment:
| Q |
223 |
gaggtgttggctggcaaggtacggagtcgttgagtgaaaatttataaagtgaatgatggcatatacagttaacatgaatgaatattgg |
310 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |
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| T |
50411 |
gaggtgttggttggcaaggtaccgagtagttgagtgaaaatttat--agtgaatgatggcata---agttagcatgaatgaatattgg |
50329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1364 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1364
Description:
Target: scaffold1364; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 1722 - 1639
Alignment:
| Q |
223 |
gaggtgttggctggcaaggtacggagtcgttgagtgaaaatttataaagtgaatgatggcatatacagttaacatgaatgaatattgg |
310 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||| |
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| T |
1722 |
gaggtgttggttggcaaggtaccgagtagttgagtgaaaatttat--tgtggatgatggc--atacagttagcatgaatgaatattgg |
1639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 17876 - 17955
Alignment:
| Q |
226 |
gtgttggctggcaaggtacggagtcgttgagtgaaaatttataaagtgaatgatggcatatacagttaacatgaatgaatattg |
309 |
Q |
| |
|
||||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |
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| T |
17876 |
gtgttggttggcaaggtaccaagttgctgagtgaaaatttataa--tgaatgatggc--atacagttagcatgaatgaatattg |
17955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 18140 - 18220
Alignment:
| Q |
226 |
gtgttggctggcaaggtacggagtcgttgagtgaaaatttataaagtgaatgatggcatatacagttaacatgaatgaatattgg |
310 |
Q |
| |
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||||||| |||||| |||| |||| | ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |
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| T |
18140 |
gtgttggttggcaacgtaccgagtagccgagtgaaaatttata--gtgaatgatggcata--cagttagcatgaatgaatattgg |
18220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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