View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_13 (Length: 442)
Name: NF8199_low_13
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 49431799 - 49431368
Alignment:
| Q |
1 |
catcaagataaaacaaacatccatgaaggagggttttctaaataagtagctcctgtgtcgccttcactatccaagttggt-ataaacatccgaacacttg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49431799 |
catcaagataaaacaaacatccatgaaggagggttttctaaataagtagctcctgtgtcgccttcactatccaagttggttataaacatccgaacacttg |
49431700 |
T |
|
| Q |
100 |
ttagcttttcgatacacatgtgtgaccctaacgtttcagtttaatgtcattaactctttgatttttctttttcataatgttccttcccataacactccca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49431699 |
ttagcttttcgatacacatgtgtgaccctaacgtttcagtttaatgtcattaattctttgatttttctttttcataatgttccttcccataacactccca |
49431600 |
T |
|
| Q |
200 |
ttgannnnnnnncataacgttccttcccataacactgtcattgtttccatgttgtaaattctgaatcacagtgatcgaatcactcccaatgaatccattt |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49431599 |
ttgattttttttcataacgttccttcccataacactgtcattgtttccatgttgtaaattctgaatcacagtgatcgaatcactcccaatgaatccattt |
49431500 |
T |
|
| Q |
300 |
gaacttcaattcttaatattctctgccttctagctatgcaaaggccctcgtataaaccaacccctaattcttcatacatgcaatagtagcaccnnnnnnn |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49431499 |
gaacttcaattcttaatattctctgccttctagctatgcaaaggccctcgtataaaccaacccctaattcttcatacatgcaatggtagcaccaaaaaaa |
49431400 |
T |
|
| Q |
400 |
ttcacagatccctcattccattggtcattctt |
431 |
Q |
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| T |
49431399 |
ttaacagatccctcattccattggtcattctt |
49431368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 22007769 - 22007664
Alignment:
| Q |
93 |
acacttgttagcttttcgatacacatgtgtgaccctaacgtttcagtttaatgtcattaactctttgatttttctttttcataatgttccttcccataac |
192 |
Q |
| |
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|||| ||||||||| |||||||||||| |||| |||||| | |||||||||| ||| |||||||||||| || |||| || || ||||||||||| |
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| T |
22007769 |
acacctgttagcttctcgatacacatgcgtgatcctaacctcccagtttaatgccatcaactctttgatt----ttcttcacaacatttcttcccataac |
22007674 |
T |
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| Q |
193 |
actcccattg |
202 |
Q |
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|||||||||| |
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| T |
22007673 |
actcccattg |
22007664 |
T |
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