View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8199_low_15 (Length: 434)
Name: NF8199_low_15
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 165 - 420
Target Start/End: Original strand, 35631367 - 35631619
Alignment:
| Q |
165 |
ttccaagaatataggtcctgaattgaacaattcaaccgttnnnnnnnnnnnnnnnnnttattagattaaattaataaaaagttctccaaacctgtcactg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
35631367 |
ttccaagaatataggtcctgaattgaacaattcaaccgttaaaaaaaaagagaaaa-ttattagattaaattaataaaaagtt-tccaaacctgtcgctg |
35631464 |
T |
|
| Q |
265 |
tttcaagtaaacttggaggagccatatctacaaaacaacaacaaaacaatgaagtgaataattgagatgatgaagatgaatatataaggtgcgatgaatg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35631465 |
tttcaagtaaacttggaggagccatatctacaaaattcaaagaaaacaatgaagtgaataattgagatgatgaagatgaatatataaggtgcaatgaatg |
35631564 |
T |
|
| Q |
365 |
gaagtgacacgtggcatagcttcgttttggacacaaaaacagagacaagtcacagg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35631565 |
gaagtgacacgtggcatagcttcgttttggacac-aaaacagagacaagtcacagg |
35631619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 35631241 - 35631335
Alignment:
| Q |
17 |
aaagaagacttaagtttgctaaggtatcagaatttccggtgaaaatttaacaaattaaagaggaagaacagttatacgtttcagtattaatgtcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35631241 |
aaagaagacttaagtttgctaaggtatcagaatttccggtgaaaatctaacaaattaaagaggaagaacagttatacgtttcagtattaatgtcc |
35631335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University