View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_16 (Length: 430)
Name: NF8199_low_16
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_16 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 45759578 - 45759168
Alignment:
| Q |
1 |
taagccaaagaagggtaactcactcactagtagtgtctttcttcacataatgggaggcaaaaataggcaaaggaaatcttcatcttttctatctgttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45759578 |
taagccaaagaagggtaactcactcactagtagtgtctttcttcacataatgggaggcaaaaataggcaaaggaaatcttcatcttttctatctgttttt |
45759479 |
T |
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| Q |
101 |
aacattttcaaatcaagcaagcataattacaaagcttatgaagaagggccaaagccagtttccaaaatttggcctagtgatgaagacaaaggtacatggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45759478 |
aacattttcaaatcaagcaagcataattacaaagcttatgaagaagggccaaagccagtttccaaaatttggcctagtgatgaagacaaaggtacatggg |
45759379 |
T |
|
| Q |
201 |
gggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaagcacatttcggactcagaaactcatcatcaacttcaagctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45759378 |
gggtagctgatcctgttattgacatgagagctacagcttttattgctcgatacaagaagcacatttcggactcagaaactcatcatcaacttcaagctta |
45759279 |
T |
|
| Q |
301 |
agcatagcattagaatttttcaggattatgaaattttaattactactatcattactgtacctttaatttattgtctttataggtattgatcataaattca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45759278 |
agcatagcattagaatttttcaggattatgaaattttaattactactatcattactgtacctttaatttattgtctttataggtattgatcataaattca |
45759179 |
T |
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| Q |
401 |
tatgtcgtgtt |
411 |
Q |
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| T |
45759178 |
tatgtcgtgtt |
45759168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 27377 - 27289
Alignment:
| Q |
170 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaa |
258 |
Q |
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| T |
27377 |
tggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
27289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 6721 - 6633
Alignment:
| Q |
170 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaa |
258 |
Q |
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| T |
6721 |
tggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
6633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 17049 - 16961
Alignment:
| Q |
170 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaa |
258 |
Q |
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| T |
17049 |
tggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
16961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 37855527 - 37855615
Alignment:
| Q |
170 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaa |
258 |
Q |
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| T |
37855527 |
tggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
37855615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 37867715 - 37867803
Alignment:
| Q |
170 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaa |
258 |
Q |
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||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
37867715 |
tggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
37867803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 37881755 - 37881843
Alignment:
| Q |
170 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaa |
258 |
Q |
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||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
37881755 |
tggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
37881843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 37911700 - 37911788
Alignment:
| Q |
170 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctctatacaagaa |
258 |
Q |
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||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
37911700 |
tggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
37911788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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