View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_17 (Length: 421)
Name: NF8199_low_17
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 43337875 - 43337500
Alignment:
| Q |
19 |
atagctttggtgtcattctactagagttgctaacaggcagacctgcagtaactgagggaactgaattggtgaagtgggttttacgtaattcaagaaatca |
118 |
Q |
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| T |
43337875 |
atagctttggtgtcattctactagagttgctaacaggcagacctgcagtaactgagggaactgaattggtgaagtgggttttacgtaattcaagaaatca |
43337776 |
T |
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| Q |
119 |
tgatatcattcttgatttgaacgttagtagaacatcacaggctgttagaaaccaaatgcttgcaattctggagattgctcttgtttgtgtaagcacatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43337775 |
tgatatcattcttgatttgaacgttagtagaacatcacaggctgttagaaaccaaatgcttgcaattctggagattgctcttgtttgtgtaagctcatcc |
43337676 |
T |
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| Q |
219 |
tctgatacaagaccaaagatgaagactgtgctacggatgttgctgaatgccagataaaatcatactctcgagggctaaattggatctacatagattttgt |
318 |
Q |
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| T |
43337675 |
tctgatacaagaccaaagatgaagactgtgctacggatgttgctgaatgccagataaaatcacactctcgagggctaaattggatctacatagattttgt |
43337576 |
T |
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| Q |
319 |
tttgtgtggtgtattgaatttatacaaagaagatgtaagacatcaaataggacgaattttgcacaatctgtctatg |
394 |
Q |
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| T |
43337575 |
tttgcgtggtgtattgaatttatacaaagaagatgtaagacatcaaataggacgaattttgcacaatccgtctatg |
43337500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 43333416 - 43333148
Alignment:
| Q |
19 |
atagctttggtgtcattctactagagttgctaacaggcagacctgcagtaactgagggaactgaattggtgaagtgggttttacgtaattcaagaaatca |
118 |
Q |
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|||||||||| || |||||||| || ||||| || || | ||| |||| ||| ||||| |||||||||| ||||||||||| ||||||||||||||||| |
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| T |
43333416 |
atagctttggggtgattctactggaattgctgaccggaaaaccctcagtgactaagggagctgaattggtaaagtgggttttgcgtaattcaagaaatca |
43333317 |
T |
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| Q |
119 |
tgatatcattcttgatttgaacgttagtagaacatcacaggctgttagaaaccaaatgcttgcaattctggagattgctcttgtttgtgtaagcacatcc |
218 |
Q |
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||| ||||||||||||||| || || | ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43333316 |
agattacattcttgatttgaatgtcagcaaaacatcagagtctgttagaaaccaaatgcttgaaattctggagattgctcttgtttgtgtaagcacatcc |
43333217 |
T |
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| Q |
219 |
tctgatacaagaccaaagatgaagactgtgctacggatgttgctgaatgccagataaaatcatactctc |
287 |
Q |
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||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
43333216 |
cctgatgaaagaccaaagatgaagactgtgctaagaatgttgctgaatgccagataaaatcatactctc |
43333148 |
T |
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