View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_2 (Length: 744)
Name: NF8199_low_2
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 727
Target Start/End: Original strand, 3884502 - 3885228
Alignment:
| Q |
1 |
tacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3884502 |
tacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaac-accaactctatgaatccaattacgat |
3884600 |
T |
|
| Q |
101 |
caaaccttgtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaattggttg |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3884601 |
caaaccttgtgaagctcttatctaaaaaagctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaataggttg |
3884700 |
T |
|
| Q |
201 |
ttcatcatcttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactaccaagcttatggctgctgctctctcaaatgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3884701 |
ttcatcatcttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactaccaagcttatggctgctactctctcaaatgaa |
3884800 |
T |
|
| Q |
301 |
gaaaatttgcttcccctcctattagcttcaagttccattcaaaagattgatttagatgataaaaaattatgttcggggaaannnnnnngtgttgctaatt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3884801 |
gaaaatttgcttcccctcctattagcttcaagttccattcaaaagattgatttagatgataaaaaattatgttcggggaaa-ttttttgtgttgctaatt |
3884899 |
T |
|
| Q |
401 |
aaaatgtatatatgtttatatgatatgatgaaattgcaacacaaaaatattgatatggtaagtggaatattgctttttcaaagtaagcactaaagagcat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884900 |
aaaatgtatatatgtttatatgatatgatgaaattgcaacacaaaaatattgatatggtaagtggaatattgctttttcaaagtaagcactaaagagcat |
3884999 |
T |
|
| Q |
501 |
cggattctcattcaaaagaaatacatcaatgtgcgtaannnnnnnnnnnnnnnnnnnnnnnngaaagaaagagggtgtaagcttgggannnnnnnnnata |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |
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| T |
3885000 |
cggattctcattcaaaagaaatacatcaatgtgcgcaatttttttaacctttttctttttttgaaagaaagagggtgtaagcttgggaaaaaaaattata |
3885099 |
T |
|
| Q |
601 |
aaacagtcatatgaaaacttagaattatcagctgacaatgattaatttaagcaggagcaaacaagctcatagaaaatcaaagagactcc--attatcaca |
698 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
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| T |
3885100 |
aaacagtcatatgaaaacttagaattatcagctgacaatgattaatttaagcaggagcaaacaagctcgtagaaaaacaaagagactccatattatcaca |
3885199 |
T |
|
| Q |
699 |
atttcgatagggttttgtcatacggaagg |
727 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
3885200 |
atttcgatagggttgagtcatacggaagg |
3885228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 3873981 - 3874331
Alignment:
| Q |
9 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaacctt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3873981 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaacctt |
3874080 |
T |
|
| Q |
109 |
gtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaattggttgttcatcat |
208 |
Q |
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| T |
3874081 |
gtgaagctcttatccaaaaaagctgataaagatatgactaaaaccaatacaaaaagtaacattggtaaccataaagtaacactaattggttgttcatcat |
3874180 |
T |
|
| Q |
209 |
cttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactaccaagcttatggctgctgctctctcaaatgaagaaaattt |
308 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | || |||||||| |
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| T |
3874181 |
cttccaactcactctctgatctgtgatctatgtatagaggagaagccacagctagaactactaagcttatggctgctactctctcataagatgaaaattt |
3874280 |
T |
|
| Q |
309 |
gcttcccctcctattagcttcaagttccattcaaaagattgatttagatga |
359 |
Q |
| |
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| ||||||||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
3874281 |
gtgacccctcctactagcttcaggttccattcagaagattgatttagatga |
3874331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 389 - 510
Target Start/End: Original strand, 3874337 - 3874462
Alignment:
| Q |
389 |
gtgttgctaattaaaatgtatatatgttt-atatgatatgatgaaattgcaacacaaaaatattgatatggtaagtggaatattgctttttcaaagtaag |
487 |
Q |
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|||||| |||||||||||||| ||| | | ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |
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| T |
3874337 |
gtgttgttaattaaaatgtatgtatatatgatatgatatgatggaattgcaacacaaaaatgttgatatggtaagtggaatattgc-ttttcaaagtatg |
3874435 |
T |
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| Q |
488 |
c----actaaagagcatcggattctca |
510 |
Q |
| |
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| |||||||||||||||||||||| |
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|
| T |
3874436 |
cactaactaaagagcatcggattctca |
3874462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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