View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_21 (Length: 408)
Name: NF8199_low_21
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 30198406 - 30198245
Alignment:
| Q |
90 |
catggtcgatgtaaagttatttcacattgacatttaatggaaactcgtgaaaatgctattgaagtccacattataaaatttaaacacatcaatgattatt |
189 |
Q |
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| T |
30198406 |
catggtcgatgtaaagttatttcacattgacatttaatggaaactcgtgaaaatgctattgaagtccacattataaaatttaaacatatcagttattatt |
30198307 |
T |
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| Q |
190 |
ccaacacttaaagaagcaatctttcatttctcatgacaatcttcactttcaaagcgcttcca |
251 |
Q |
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| T |
30198306 |
ccaacacttaaagaagcaatctttcatttctcatgacaatcttcactttcaaagcgtttcca |
30198245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 252 - 393
Target Start/End: Complemental strand, 30198196 - 30198055
Alignment:
| Q |
252 |
tgttgatttgaaagagtcctcacataatccaaactttcatgttgattgttgctcatgagtggctgcttgctaattatcatagaagtagatgaggacttga |
351 |
Q |
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| T |
30198196 |
tgttgagttgaaggagtcctcatataatccaaactttcatgttgtttgttgctcatgagtggctggttactaattatcatagaagtagatgaggacttga |
30198097 |
T |
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| Q |
352 |
agttttactcacttgttctccttgtcgaaatacaaatgaaac |
393 |
Q |
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| T |
30198096 |
agttttactcacctgttctccttgtcgaaatacaaatgaaac |
30198055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 11142105 - 11142148
Alignment:
| Q |
259 |
ttgaaagagtcctcacataatccaaactttcatgttgattgttg |
302 |
Q |
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| T |
11142105 |
ttgaaagagtcctcacaaaatccaaacattcatgtggattgttg |
11142148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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