View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_24 (Length: 392)
Name: NF8199_low_24
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 9102987 - 9102626
Alignment:
| Q |
16 |
attgttgcaccaacaacatacagtcatgctgatatgattttttatgctctaaatgcagttgaagggttccaagaattagaaccaaagtcaa---aggaag |
112 |
Q |
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| T |
9102987 |
attgttgcaccaacaacatacagccatactgatctgattttttatgctctaaatgcagttgaagggttccaagaatcagaaccaaagtcaatcaaggaag |
9102888 |
T |
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| Q |
113 |
catttgagagaaaataaagcaagggaactattaaaggtaacgaataaagaaatattggagaagaataaaaatttgaagcttctggaactatctaagagtt |
212 |
Q |
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| T |
9102887 |
catttgagagaaaataaagcaagg-aactattaaaggtaacgaataaagaaacattggagaagaataaaaatttgaagcttctgcaaccatctaagagtt |
9102789 |
T |
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| Q |
213 |
aaagggtagttggatgagagtggatattagagaaaaagtaacgtattacaagtattgaaaaactaaggtacaaagaaagaacgt-ggaacaactttgatt |
311 |
Q |
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| T |
9102788 |
aaagggtagttggatgagagtggatattagagaaaaagtaacgtattacaagtattgaaaaactaaggtacaaagaaagaacgtgggaacaactttgatt |
9102689 |
T |
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| Q |
312 |
aaggttaagggaattatttacaatgagattttatcacctatagtaaaacattattagataatgatact |
379 |
Q |
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| T |
9102688 |
aaggttaagggaattatttacaatgagattttatca-----agtaaaacattattagagaaagatact |
9102626 |
T |
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