View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8199_low_25 (Length: 361)
Name: NF8199_low_25
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 38636441 - 38636640
Alignment:
| Q |
1 |
atatcataaacaaacaatcactgaaagattcaaactatagaaaacaataaaggttgtaacacatttaaactgtgaacagataatcacagaaagattcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636441 |
atatcataaacaaacaatcactgaaagattcaaactttagaaaacaataaaggt---aacacatttaaactgtgaacagataatcacagaaagattcaaa |
38636537 |
T |
|
| Q |
101 |
ttttagtaaataaaaaatcaacatgttcaagagaattaatcaatcacataaaccctgataaccaaaagtactaaatcacccttaatcttcaatttttcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636538 |
ttttagtaaataaaaaatcaacatgttcaagagaattaatcaatcacataaaccctgataagcaaaagtactaaatcacccttaatcttcaatttttcag |
38636637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 258 - 342
Target Start/End: Original strand, 38636678 - 38636762
Alignment:
| Q |
258 |
ctctgggttggttttgttcggttggagcaatgacagctctagaagccatagcagaaatactatcagattcttgaagattagatcc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38636678 |
ctctgggttggttttgttcggttggagcaatgacagctctagaagccatagcagaaatattatcagattcttgaagattagatcc |
38636762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University