View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8199_low_3 (Length: 588)

Name: NF8199_low_3
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8199_low_3
NF8199_low_3
[»] chr1 (28 HSPs)
chr1 (270-588)||(32882706-32883018)
chr1 (20-164)||(32883118-32883265)
chr1 (475-588)||(376434-376548)
chr1 (475-588)||(9312967-9313082)
chr1 (475-588)||(27102521-27102636)
chr1 (537-587)||(34775212-34775262)
chr1 (475-588)||(11439647-11439762)
chr1 (479-588)||(46768515-46768627)
chr1 (504-585)||(41126107-41126190)
chr1 (477-587)||(50588906-50589014)
chr1 (492-587)||(52278622-52278717)
chr1 (476-587)||(49820495-49820609)
chr1 (548-588)||(16149115-16149155)
chr1 (475-572)||(27905786-27905885)
chr1 (475-567)||(4431035-4431129)
chr1 (477-524)||(10605100-10605147)
chr1 (507-587)||(38544375-38544457)
chr1 (538-585)||(42374526-42374573)
chr1 (537-587)||(32863237-32863287)
chr1 (537-582)||(17033939-17033984)
chr1 (475-524)||(30762016-30762065)
chr1 (539-587)||(2987816-2987863)
chr1 (537-584)||(37200485-37200532)
chr1 (537-583)||(46603705-46603751)
chr1 (475-524)||(7451888-7451937)
chr1 (547-587)||(19598990-19599031)
chr1 (475-524)||(34159048-34159097)
chr1 (539-583)||(38546876-38546920)
[»] chr3 (15 HSPs)
chr3 (477-588)||(25648022-25648135)
chr3 (475-587)||(46358009-46358123)
chr3 (475-586)||(14280176-14280289)
chr3 (475-588)||(50518716-50518831)
chr3 (475-587)||(32010127-32010241)
chr3 (480-588)||(4171083-4171193)
chr3 (481-588)||(37123709-37123818)
chr3 (475-588)||(14893269-14893384)
chr3 (539-588)||(1652569-1652617)
chr3 (482-587)||(25594142-25594249)
chr3 (480-588)||(7105183-7105294)
chr3 (537-579)||(14754974-14755016)
chr3 (551-588)||(28937427-28937464)
chr3 (478-587)||(823027-823137)
chr3 (540-585)||(14194272-14194317)
[»] chr6 (7 HSPs)
chr6 (475-588)||(3880239-3880354)
chr6 (480-586)||(20701430-20701537)
chr6 (479-585)||(17278093-17278201)
chr6 (478-588)||(6860370-6860484)
chr6 (477-573)||(16180486-16180583)
chr6 (539-579)||(12794465-12794505)
chr6 (539-579)||(26534424-26534464)
[»] chr2 (19 HSPs)
chr2 (475-587)||(4472283-4472397)
chr2 (475-588)||(10173206-10173321)
chr2 (475-588)||(4975084-4975199)
chr2 (475-588)||(4992992-4993107)
chr2 (475-587)||(25504516-25504629)
chr2 (475-587)||(7696301-7696415)
chr2 (505-584)||(27740331-27740412)
chr2 (537-584)||(22884805-22884852)
chr2 (475-583)||(33788253-33788362)
chr2 (475-581)||(29487447-29487553)
chr2 (481-585)||(34230543-34230648)
chr2 (508-588)||(13337589-13337671)
chr2 (480-587)||(15361063-15361172)
chr2 (475-585)||(29997287-29997399)
chr2 (555-588)||(37770359-37770392)
chr2 (537-587)||(2063218-2063269)
chr2 (537-588)||(12343144-12343195)
chr2 (537-587)||(24165867-24165917)
chr2 (478-526)||(40470793-40470840)
[»] chr5 (19 HSPs)
chr5 (475-587)||(8731278-8731391)
chr5 (477-588)||(25992340-25992453)
chr5 (505-588)||(30097672-30097757)
chr5 (475-587)||(26405175-26405289)
chr5 (501-587)||(31742504-31742592)
chr5 (539-587)||(13953941-13953989)
chr5 (537-585)||(24071952-24072000)
chr5 (475-581)||(23426646-23426754)
chr5 (475-527)||(7194928-7194980)
chr5 (475-588)||(8297810-8297924)
chr5 (537-588)||(7682892-7682943)
chr5 (501-573)||(26367632-26367706)
chr5 (538-588)||(26045655-26045705)
chr5 (538-579)||(27713421-27713462)
chr5 (495-587)||(25657767-25657860)
chr5 (539-586)||(31722012-31722058)
chr5 (536-587)||(33258579-33258630)
chr5 (475-520)||(33109829-33109874)
chr5 (547-587)||(6159827-6159866)
[»] chr4 (20 HSPs)
chr4 (480-588)||(42719495-42719605)
chr4 (505-588)||(28967214-28967299)
chr4 (491-588)||(48098645-48098744)
chr4 (481-583)||(35336914-35337013)
chr4 (475-563)||(9262807-9262897)
chr4 (477-573)||(21983504-21983601)
chr4 (475-579)||(52009173-52009279)
chr4 (537-586)||(46487621-46487670)
chr4 (475-588)||(41117595-41117710)
chr4 (478-585)||(19814847-19814957)
chr4 (475-588)||(16832646-16832762)
chr4 (475-587)||(38636861-38636974)
chr4 (480-522)||(2061464-2061506)
chr4 (479-581)||(20632128-20632233)
chr4 (537-583)||(35947998-35948044)
chr4 (539-587)||(38930128-38930177)
chr4 (539-579)||(19432386-19432426)
chr4 (375-407)||(32174341-32174373)
chr4 (555-587)||(39420745-39420777)
chr4 (539-579)||(43373784-43373824)
[»] chr8 (13 HSPs)
chr8 (475-588)||(12197702-12197817)
chr8 (475-588)||(12442130-12442245)
chr8 (477-567)||(8843743-8843833)
chr8 (475-588)||(17656363-17656478)
chr8 (539-587)||(30235809-30235857)
chr8 (537-584)||(17720398-17720444)
chr8 (481-584)||(5214941-5215044)
chr8 (475-518)||(2613174-2613217)
chr8 (537-584)||(9831694-9831741)
chr8 (537-579)||(10248256-10248298)
chr8 (539-587)||(8862314-8862363)
chr8 (551-587)||(10552609-10552645)
chr8 (539-583)||(41790961-41791005)
[»] scaffold0050 (1 HSPs)
scaffold0050 (475-587)||(37047-37161)
[»] chr7 (20 HSPs)
chr7 (475-574)||(6726046-6726147)
chr7 (481-588)||(42532892-42533001)
chr7 (475-588)||(1321133-1321246)
chr7 (477-588)||(3478688-3478800)
chr7 (477-582)||(28534134-28534240)
chr7 (481-588)||(33719305-33719413)
chr7 (475-588)||(8745469-8745583)
chr7 (537-585)||(16828791-16828839)
chr7 (480-573)||(47456706-47456800)
chr7 (480-587)||(26385792-26385897)
chr7 (537-584)||(13312180-13312227)
chr7 (538-588)||(36674809-36674859)
chr7 (475-588)||(6716363-6716478)
chr7 (538-586)||(16954830-16954878)
chr7 (475-588)||(44755907-44756021)
chr7 (475-587)||(9107491-9107605)
chr7 (505-573)||(9350067-9350136)
chr7 (537-572)||(22567783-22567818)
chr7 (475-524)||(40292637-40292685)
chr7 (504-585)||(23983586-23983669)
[»] scaffold1613 (1 HSPs)
scaffold1613 (507-587)||(654-736)
[»] scaffold0063 (1 HSPs)
scaffold0063 (501-588)||(58467-58556)
[»] scaffold1384 (1 HSPs)
scaffold1384 (542-587)||(1347-1393)
[»] scaffold0002 (1 HSPs)
scaffold0002 (475-524)||(426555-426604)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 270 - 588
Target Start/End: Complemental strand, 32883018 - 32882706
Alignment:
Q  270 gtaagaatatgacgtgagtatgaaagaaagttgttcatgattgtcatacaatggttgtacaaatattattactcttgtagaactactcttacatttcgac 369  Q
    |||||||||| |||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  32883018 gtaagaatatcacgtgagtatgaaagaaagttgtttaaaattgtcataaaatggttgtacaaatattattactcttctagaactactcttacattttgac 32882919  T
Q  370 acccataaatttcatacactcattcaacatcatattttatatttatcgctttttctatcacatcaataacatatcgcattattctttgtctctatttann 469  Q
    ||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||       
T  32882918 acc-ataaatttcttacactcattcaatatcatattttatatttatctctttttctatcacatcaataacatatcgcattattctctgtctctattt--- 32882823  T
Q  470 nnnnnaacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaa 569  Q
         |||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||| ||||||||||||||||||||||||||||||| |||    
T  32882822 tttttaacagcaaattttattaaacaatcacatccctgctcaagacgaac--agactggaatcagaaaatacaaactaaaggcgccgtatataggcagaa 32882725  T
Q  570 cacccgaaaataaacaccc 588  Q
    |||||||||||||||||||    
T  32882724 cacccgaaaataaacaccc 32882706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 32883265 - 32883118
Alignment:
Q  20 tagaggagaaaatacttttttctccata---ttagtgatgatgtttctttctcgcacttacttagtagcttaccacattcccactatatatataagaaaa 116  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  32883265 tagaggagaaaatacttttttctccataagtttagtgatgatgtttctttcttgcacttatttagtagcttaccacattcccactatatatataagaaaa 32883166  T
Q  117 agtactagaaccaaagacggtagaggatatattgtagaacgagaaatg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32883165 agtactagaaccaaagacggtagaggatatattgtagaacgagaaatg 32883118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 376434 - 376548
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||||||||  |  ||| || | |||||||| |||||||||||||||||||| ||||||    
T  376434 aacagcaaattttattaaccac-cacgtccctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacac 376532  T
Q  573 ccgaaaataaacaccc 588  Q
    | ||||||||||||||    
T  376533 ctgaaaataaacaccc 376548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 9312967 - 9313082
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||||||||||||||||  | ||| |||||||||||||||||||| |||  || |  | ||||||| | ||||||| ||||||||||||||||||    
T  9312967 aacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacac 9313066  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||||||||||||    
T  9313067 ccgaaaataaacaccc 9313082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 27102636 - 27102521
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||||||||| || ||| ||| |||||||||||| |||  ||  || |  | ||||||||| ||||| ||||||||||||||||||||    
T  27102636 aacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacac 27102537  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||||||||||||    
T  27102536 ccgaaaataaacaccc 27102521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 537 - 587
Target Start/End: Complemental strand, 34775262 - 34775212
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34775262 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 34775212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 11439647 - 11439762
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaa----aatacaaactaaaggcgccgtatataggcggaac 570  Q
    |||| ||||||||||||||||| || ||| |||||||||||||||| |||||||  | ||||    ||||||||| ||||||| | ||||||| ||||||    
T  11439647 aacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcgg--tgaaaatgagaatacaaacaaaaggcgacatatatagacggaac 11439744  T
Q  571 acccgaaaataaacaccc 588  Q
    | ||||||||||||||||    
T  11439745 atccgaaaataaacaccc 11439762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 588
Target Start/End: Complemental strand, 46768627 - 46768515
Alignment:
Q  479 gcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgcc-gtatataggcggaacacccg 575  Q
    |||||||||||||||||| || || | |||||||||||||||||||| ||  ||    |  |||||||| ||||||||| |||| |||||||||||||||    
T  46768627 gcaaattttattaaacaaccaaattcttgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccg 46768528  T
Q  576 aaaataaacaccc 588  Q
    |||||||||||||    
T  46768527 aaaataaacaccc 46768515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 585
Target Start/End: Original strand, 41126107 - 41126190
Alignment:
Q  504 cctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 585  Q
    ||||||||||||||||||||| ||  || ||| | ||||||||||||||||  ||||||||||  |||||||||||||||||||    
T  41126107 cctgctcaagacgaacagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaaca 41126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 587
Target Start/End: Original strand, 50588906 - 50589014
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccga 576  Q
    ||||||||||||||||| | | | ||| |||||||||||||| | |||||||  | |||  |||||||| ||||||||||||||||||||||||||| ||    
T  50588906 cagcaaattttattaaaaact-agatctctgctcaagacgaataaagatcgg--tgaaacgatacaaacgaaaggcgccgtatataggcggaacacctga 50589002  T
Q  577 a-aataaacacc 587  Q
    | ||||||||||    
T  50589003 agaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 587
Target Start/End: Complemental strand, 52278717 - 52278622
Alignment:
Q  492 aacaatcacatccctgctcaagacgaacagaga-tcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    ||||| || |||||||||||||||||||||||| |  ||| || | ||||||| || |||||||| ||||||||||||||||| |||||||||||||    
T  52278717 aacaaccagatccctgctcaagacgaacagagactgtgaaacagagaatacaagct-aaggcgccatatataggcggaacacctgaaaataaacacc 52278622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 587
Target Start/End: Complemental strand, 49820609 - 49820495
Alignment:
Q  476 acagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 573  Q
    ||||||||||||||| |||||||  ||| |||||||||||  | ||||||||  |||||| | ||||||||| |||| || | ||| |||||||||||||    
T  49820609 acagcaaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacc 49820510  T
Q  574 c-gaaaataaacacc 587  Q
    | |||||||||||||    
T  49820509 cggaaaataaacacc 49820495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 548 - 588
Target Start/End: Complemental strand, 16149155 - 16149115
Alignment:
Q  548 aaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccc 16149115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 572
Target Start/End: Complemental strand, 27905885 - 27905786
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||| |||||||||||| || |||||||||||||| ||| ||||| ||  |||||| | | ||||||||| ||||| |||||||||| |||||||    
T  27905885 aacaacaaaatttattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaacac 27905786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 567
Target Start/End: Complemental strand, 4431129 - 4431035
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcgg 567  Q
    |||||||||||||||||||||| || ||| |||||||||||||| ||||| ||  |||    | ||||||||| |||||||||||||| ||||||    
T  4431129 aacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgg 4431035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 524
Target Start/End: Complemental strand, 10605147 - 10605100
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 524  Q
    |||||||||||||| |||||||| |||||||||||||||||| |||||    
T  10605147 cagcaaattttatttaacaatcagatccctgctcaagacgaatagaga 10605100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 507 - 587
Target Start/End: Original strand, 38544375 - 38544457
Alignment:
Q  507 gctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||||||||| ||||| |  | ||| | |||||||||||||| || |||||||| | ||||||||||||||||||||||    
T  38544375 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacacc 38544457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 538 - 585
Target Start/End: Complemental strand, 42374573 - 42374526
Alignment:
Q  538 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 585  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaaca 42374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 587
Target Start/End: Original strand, 32863237 - 32863287
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||||||||    
T  32863237 aatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacacc 32863287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 17033984 - 17033939
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataa 582  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  17033984 aatacaaacaaaaggcgtcgtatataagcggaacacccgaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 30762016 - 30762065
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 524  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||||||    
T  30762016 aacagcaaattttatttaaaaatcagatccttgctcaagacgaacagaga 30762065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 2987816 - 2987863
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  2987816 tacaaactaa-ggcgccgtatataggcggaacatccgaaaacaaacacc 2987863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Complemental strand, 37200532 - 37200485
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 584  Q
    |||||||||||||| |  ||||||||||||||||| ||||||||||||    
T  37200532 aatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 583
Target Start/End: Complemental strand, 46603751 - 46603705
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 583  Q
    ||||||||| |||| ||  ||||||||||||||||||||||||||||    
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaa 46603705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 7451888 - 7451937
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 524  Q
    |||||||||| |||||||||||  | ||| ||||||||||||||||||||    
T  7451888 aacagcaaatattattaaacaactagatctctgctcaagacgaacagaga 7451937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 587
Target Start/End: Complemental strand, 19599031 - 19598990
Alignment:
Q  547 aaaggcgccgtatataggcggaacacccgaaaa-taaacacc 587  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  19599031 aaaggcgccgtatataggcggaacacctgaaaagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 34159097 - 34159048
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 524  Q
    |||| |||| ||||||||||||||| ||||||||||||||| || |||||    
T  34159097 aacaacaaaatttattaaacaatcagatccctgctcaagacaaatagaga 34159048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 583
Target Start/End: Original strand, 38546876 - 38546920
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 583  Q
    ||||||||||| | | ||||||||||||||||| |||||||||||    
T  38546876 tacaaactaaatgtgtcgtatataggcggaacatccgaaaataaa 38546920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 588
Target Start/End: Complemental strand, 25648135 - 25648022
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc 574  Q
    |||||||||| ||||||||| |  ||||||| ||||||||||||||||||||  || | || ||||||||| |||||||| |||||||| ||||||||||    
T  25648135 cagcaaatttaattaaacaacctaatccctgttcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacaccc 25648036  T
Q  575 gaaaataaacaccc 588  Q
    ||||||||||||||    
T  25648035 gaaaataaacaccc 25648022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 475 - 587
Target Start/End: Original strand, 46358009 - 46358123
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaa--tcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||| ||||| || |||||||||||||||||||||||| | ||   ||| |||||||||||||||| ||| ||||||||||| |||||    
T  46358009 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaacac 46358108  T
Q  573 ccgaaaataaacacc 587  Q
    | |||||||||||||    
T  46358109 ctgaaaataaacacc 46358123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 475 - 586
Target Start/End: Original strand, 14280176 - 14280289
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    ||||| |||| |||||||||||||| |||  ||||||||||||||| ||||||  ||| |  | |||||||| |||||||||||||||||||||||||||    
T  14280176 aacagtaaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatataggcggaacac 14280275  T
Q  573 ccgaaaataaacac 586  Q
    |||||| |||||||    
T  14280276 ccgaaagtaaacac 14280289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 50518716 - 50518831
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||||||||||   ||||||||||||||||||||||||  ||  || |  | ||||||||| ||||| | ||||||||||||||||||    
T  50518716 aacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacac 50518815  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||||||||||||    
T  50518816 ccgaaaataaacaccc 50518831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 32010241 - 32010127
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||| ||||| || |||||| ||||||||||||||||||||  || ||| | ||||||| ||||| ||| ||||||||||||||| ||    
T  32010241 aacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatac 32010142  T
Q  573 ccgaaaataaacacc 587  Q
    | |||||||||||||    
T  32010141 ctgaaaataaacacc 32010127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 480 - 588
Target Start/End: Complemental strand, 4171193 - 4171083
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 577  Q
    |||||| ||||||||||  | ||||||||| |||||||||||||| |||  || |  | ||||||||| ||||||| ||||||||||||||||||| |||    
T  4171193 caaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 4171094  T
Q  578 aataaacaccc 588  Q
    |||||||||||    
T  4171093 aataaacaccc 4171083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 481 - 588
Target Start/End: Complemental strand, 37123818 - 37123709
Alignment:
Q  481 aaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 578  Q
    ||||||||||||||||| | ||| ||||||||||||||| |||| ||  ||| |  | ||||||||| ||||||| | || |||| ||||||||||||||    
T  37123818 aaattttattaaacaattaaatctctgctcaagacgaactgagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaa 37123719  T
Q  579 ataaacaccc 588  Q
    ||||||||||    
T  37123718 ataaacaccc 37123709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 14893384 - 14893269
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||||||||| || ||  |||||||||| |||||||||  ||  || |  | | ||||||| |||| |||||||||||||||||||||    
T  14893384 aacaacaaattttattaaacaaccagataactgctcaagatgaacagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacac 14893285  T
Q  573 ccgaaaataaacaccc 588  Q
    | ||||||||||||||    
T  14893284 ctgaaaataaacaccc 14893269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 588
Target Start/End: Original strand, 1652569 - 1652617
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1652569 tacaaactaaaggcgtcgtatataggcggaacacccg-aaataaacaccc 1652617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 587
Target Start/End: Original strand, 25594142 - 25594249
Alignment:
Q  482 aattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    ||||||||| || || || ||| ||||||||||| ||||||||||||  | ||| | |||| |||  ||| ||| ||||||||||||||||||||||||     
T  25594142 aattttatttaaaaaccagatcactgctcaagacaaacagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaag 25594241  T
Q  580 taaacacc 587  Q
    ||||||||    
T  25594242 taaacacc 25594249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 588
Target Start/End: Complemental strand, 7105294 - 7105183
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg-----gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc 574  Q
    ||||||||||||  || ||| |||||||||||||||||||||||| ||     ||| || | | |||||||||||| | || |||| |||||||||||||    
T  7105294 caaattttatta--cattcagatccctgctcaagacgaacagagaccgccggtgaaacagagattacaaactaaagacaccttataaaggcggaacaccc 7105197  T
Q  575 gaaaataaacaccc 588  Q
     |||||||||||||    
T  7105196 aaaaataaacaccc 7105183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 579
Target Start/End: Original strand, 14754974 - 14755016
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  14754974 aatacaaactaaaggcgccgtacataggcggaacaccctaaaa 14755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 588
Target Start/End: Original strand, 28937427 - 28937464
Alignment:
Q  551 gcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    |||||||||||| |||||||||||||||||||||||||    
T  28937427 gcgccgtatataagcggaacacccgaaaataaacaccc 28937464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 587
Target Start/End: Original strand, 823027 - 823137
Alignment:
Q  478 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccg 575  Q
    |||||||||||||||| || || ||| |||||||||||||||||||| ||  || ||| | | |||||  |||||||| |||||||| | |||||||||     
T  823027 agcaaattttattaaaaaaccagatcgctgctcaagacgaacagagaccggtgattcagagactacaagttaaaggcgtcgtatataaggggaacaccc- 823125  T
Q  576 aaaataaacacc 587  Q
    ||| ||||||||    
T  823126 aaattaaacacc 823137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 585
Target Start/End: Complemental strand, 14194317 - 14194272
Alignment:
Q  540 acaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 585  Q
    |||||| ||||| ||| ||||||||||||||| |||||||||||||    
T  14194317 acaaacaaaaggtgccttatataggcggaacatccgaaaataaaca 14194272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 3880239 - 3880354
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| ||  ||| |  ||||||||||| |||||  ||||||||| |||||||||    
T  3880239 aacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacac 3880338  T
Q  573 ccgaaaataaacaccc 588  Q
    |  |||||||||||||    
T  3880339 caaaaaataaacaccc 3880354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 480 - 586
Target Start/End: Original strand, 20701430 - 20701537
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 577  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||||  || |  | ||||||||| |||||||| |||||||||||||||||| | |    
T  20701430 caaattttattaaacaaccaaatccct-ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctgga 20701528  T
Q  578 aataaacac 586  Q
    |||||||||    
T  20701529 aataaacac 20701537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 585
Target Start/End: Original strand, 17278093 - 17278201
Alignment:
Q  479 gcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccga 576  Q
    |||||||||||| || || || ||| ||||| |||| ||||||||| |||  | ||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  17278093 gcaaattttatttaaaaaccagatcgctgcttaagatgaacagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccga 17278192  T
Q  577 aaataaaca 585  Q
    |||||||||    
T  17278193 aaataaaca 17278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 588
Target Start/End: Complemental strand, 6860484 - 6860370
Alignment:
Q  478 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatata--ggcggaacacc 573  Q
    |||| ||||||||||||||  | |||||||||||||| ||| | ||||||  ||| | || ||||||||| |||| |||||||||||  |||||||||||    
T  6860484 agcatattttattaaacaactagatccctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacc 6860385  T
Q  574 cgaaaataaacaccc 588  Q
    | |||||||||||||    
T  6860384 caaaaataaacaccc 6860370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 573
Target Start/End: Original strand, 16180486 - 16180583
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 573  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| ||||||  ||| || | ||||||||  |||| | ||||||||| ||||||||||    
T  16180486 cagcaaattttattaaa-aatcagatctctgctcaagacgaacaaagatcggtgaaacagataatacaaatgaaagacaccgtatataagcggaacacc 16180583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 539 - 579
Target Start/End: Complemental strand, 12794505 - 12794465
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  12794505 tacaaactaaaggcgccgtatatagacggaacatccgaaaa 12794465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 579
Target Start/End: Original strand, 26534424 - 26534464
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    ||||||| ||||||| ||||||||||||||||||| |||||    
T  26534424 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 26534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 4472397 - 4472283
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||| |||||||  ||||| | |||||| |||||||| ||||  ||||| | ||||||||||||||||| ||||||||| |||||||     
T  4472397 aacagcaaattttattcaacaatctgatccccgttcaagatgaacagagttcggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacat 4472298  T
Q  573 ccgaaaataaacacc 587  Q
    |||||||||||||||    
T  4472297 ccgaaaataaacacc 4472283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 10173206 - 10173321
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||| | ||||| || || |||||||||||||||||||||||||  || || | ||||||||||||| |||  |||||||||||||||||    
T  10173206 aacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacac 10173305  T
Q  573 ccgaaaataaacaccc 588  Q
    | ||||||||||||||    
T  10173306 ctgaaaataaacaccc 10173321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 4975199 - 4975084
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga-tcg-gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||| ||| ||||  || |||||||||||||||||||| | | ||| | || ||||||||||||||||| ||||||||||| ||||||    
T  4975199 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4975100  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||||||||||||    
T  4975099 ccgaaaataaacaccc 4975084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 4993107 - 4992992
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga-tcg-gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||| ||| ||||  || |||||||||||||||||||| | | ||| | || ||||||||||||||||| ||||||||||| ||||||    
T  4993107 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4993008  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||||||||||||    
T  4993007 ccgaaaataaacaccc 4992992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 587
Target Start/End: Original strand, 25504516 - 25504629
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||| | |||  | ||| | ||||||||| ||||||||||||||||| || |||||    
T  25504516 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 25504614  T
Q  573 ccgaaaataaacacc 587  Q
    || ||||||||||||    
T  25504615 ccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 7696415 - 7696301
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||| ||  |||    | ||||||||| |||||  |||||||||||||||||||    
T  7696415 aacagcaaattttattgaacaaccaaatccctgctcaagatgaacagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacac 7696316  T
Q  573 ccgaaaataaacacc 587  Q
    || ||||||||||||    
T  7696315 ccaaaaataaacacc 7696301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 505 - 584
Target Start/End: Complemental strand, 27740412 - 27740331
Alignment:
Q  505 ctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 584  Q
    |||||||||||||||| ||||||  || ||| | ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  27740412 ctgctcaagacgaacaaagatcgatgattcagataatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 22884805 - 22884852
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 584  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22884805 aatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 475 - 583
Target Start/End: Original strand, 33788253 - 33788362
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||| || || || ||| ||||| |||||||||||||| |||  |  |  | |||||||||||||||||||||||||| |||||||||    
T  33788253 aacagcaaattttatttaa-aaccaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacac 33788351  T
Q  573 ccgaaaataaa 583  Q
    |||||||||||    
T  33788352 ccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 581
Target Start/End: Complemental strand, 29487553 - 29487447
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||||||||||||| || || |||||||||||||| ||||||||| |||  | ||| | ||||||| ||||||| ||||||||||||||||||||    
T  29487553 aacaacaaattttattaaa-aaccagatccctgctcaagatgaacagagaccggtgattcatagaatacaa-ctaaaggagccgtatataggcggaacac 29487456  T
Q  573 ccgaaaata 581  Q
    | |||||||    
T  29487455 ctgaaaata 29487447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 585
Target Start/End: Complemental strand, 34230648 - 34230543
Alignment:
Q  481 aaattttattaaacaatcacatccctgctcaagacgaacagagatcgga-atcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    |||| ||||||||||| || ||| ||||||||||||||||||||||||  | |    ||||||||| |||| ||||||||||||||||||||||  ||||    
T  34230648 aaatattattaaacaaccatatctctgctcaagacgaacagagatcggtgaactgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaaa 34230549  T
Q  580 taaaca 585  Q
    ||||||    
T  34230548 taaaca 34230543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 588
Target Start/End: Complemental strand, 13337671 - 13337589
Alignment:
Q  508 ctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    ||||||||||||||||| |||  || || | ||||||||| ||||||| |||||||||| |||||||| ||||||||||||||    
T  13337671 ctcaagacgaacagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccc 13337589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 587
Target Start/End: Complemental strand, 15361172 - 15361063
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc-ga 576  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||  |  ||| || | ||||||||| ||||||||||||||||| || |||||||  |    
T  15361172 caaattttattaaa-aatcaaatccctgctcaagacgaatagagactggtgaaacagataatacaaacgaaaggcgccgtatatagacgaaacacccaaa 15361074  T
Q  577 aaataaacacc 587  Q
    |||||||||||    
T  15361073 aaataaacacc 15361063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 475 - 585
Target Start/End: Complemental strand, 29997399 - 29997287
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||||||||||||||||||   || ||| | |||||||||||||| ||  |||    |||||| |||| |||||| ||||||||| ||||||||     
T  29997399 aacaacaaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacat 29997300  T
Q  573 ccgaaaataaaca 585  Q
    |||||||||||||    
T  29997299 ccgaaaataaaca 29997287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 555 - 588
Target Start/End: Original strand, 37770359 - 37770392
Alignment:
Q  555 cgtatataggcggaacacccgaaaataaacaccc 588  Q
    ||||||||||||||||||||||||||||||||||    
T  37770359 cgtatataggcggaacacccgaaaataaacaccc 37770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 587
Target Start/End: Complemental strand, 2063269 - 2063218
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccg-aaaataaacacc 587  Q
    ||||||||| ||||| |||||||||||||| |||||||| ||||||||||||    
T  2063269 aatacaaacgaaaggtgccgtatataggcgaaacacccgaaaaataaacacc 2063218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 588
Target Start/End: Complemental strand, 12343195 - 12343144
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    |||||||||||||| || | || | |||||||||||||||||||||||||||    
T  12343195 aatacaaactaaagacgtcttacaaaggcggaacacccgaaaataaacaccc 12343144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 587
Target Start/End: Original strand, 24165867 - 24165917
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||| ||||||| | | |||||||||||||||||||||||| |||||||    
T  24165867 aatacagactaaagacactgtatataggcggaacacccgaaaacaaacacc 24165917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 40470840 - 40470793
Alignment:
Q  478 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatc 526  Q
    |||||||||||||||| ||||| || | |||||||||||||||||||||    
T  40470840 agcaaattttattaaa-aatcagattcttgctcaagacgaacagagatc 40470793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 8731391 - 8731278
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||| | |||  | ||| | ||||||||| ||||||||||||||||| || |||||    
T  8731391 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 8731293  T
Q  573 ccgaaaataaacacc 587  Q
    || ||||||||||||    
T  8731292 ccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 477 - 588
Target Start/End: Complemental strand, 25992453 - 25992340
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaa----aatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||| ||||||||||| || ||| |||||||||||||||||||| |||  | ||||    ||||||||| |||||||||||||||| |||||||||    
T  25992453 cagcaaatattattaaacaaccagatctctgctcaagacgaacagagaccgg--tgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacac 25992356  T
Q  573 ccgaaaataaacaccc 588  Q
    |||| |||||||||||    
T  25992355 ccgacaataaacaccc 25992340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 505 - 588
Target Start/End: Complemental strand, 30097757 - 30097672
Alignment:
Q  505 ctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    ||||| |||||||||| ||| |||  ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30097757 ctgcttaagacgaacaaagaccggtaaattaaagaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccc 30097672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 587
Target Start/End: Original strand, 26405175 - 26405289
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||||||||| || ||  |||||||||||||||| ||| |||  || |  | ||||||||| ||||||| ||||||||| ||||||||    
T  26405175 aacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacac 26405274  T
Q  573 ccgaaaataaacacc 587  Q
    |||||||||||||||    
T  26405275 ccgaaaataaacacc 26405289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 501 - 587
Target Start/End: Complemental strand, 31742592 - 31742504
Alignment:
Q  501 atccctgctcaagacgaacagagatcggaat--caaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||| ||||||||||||||| |||  |  ||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  31742592 atccctgcacaagacgaacagagaccggtgttacaagaagtacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 13953941 - 13953989
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13953941 tacaaactaaaggcgccgtatataggcggaacacctgaaaataaacacc 13953989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 537 - 585
Target Start/End: Original strand, 24071952 - 24072000
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 585  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24071952 aatacaaactaagggcgccgtatataggcggaacacccgaaaataaaca 24072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 581
Target Start/End: Complemental strand, 23426754 - 23426646
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||| || ||||| ||  |||||||||| ||||||||| |||  | ||| | |||||||   ||||| ||||||||||||||||||||    
T  23426754 aacagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacac 23426655  T
Q  573 ccgaaaata 581  Q
    |||||||||    
T  23426654 ccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 7194928 - 7194980
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg 527  Q
    |||||||||||||||||||||| || |||||| ||||||||||||| ||||||    
T  7194928 aacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcg 7194980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 8297924 - 8297810
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||| |||||||| ||| || ||||||||||||||||| ||  ||| |  | ||||||||  |||||||  ||| |||||||||||||    
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacac 8297826  T
Q  573 ccgaaaataaacaccc 588  Q
    | ||||||| ||||||    
T  8297825 ctgaaaatacacaccc 8297810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 537 - 588
Target Start/End: Complemental strand, 7682943 - 7682892
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||| |||||    
T  7682943 aatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcaccc 7682892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 573
Target Start/End: Original strand, 26367632 - 26367706
Alignment:
Q  501 atccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 573  Q
    ||||||||| |||||||||||||||| |  ||||||| | |||||| ||||| |||||||||||| |||||||||    
T  26367632 atccctgcttaagacgaacagagatcagtaaatcaaagattacaaaataaagacgccgtatatagacggaacacc 26367706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 588
Target Start/End: Original strand, 26045655 - 26045705
Alignment:
Q  538 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    |||||||| ||||||||||||||||| ||||||| || |||||||||||||    
T  26045655 atacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccc 26045705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 579
Target Start/End: Complemental strand, 27713462 - 27713421
Alignment:
Q  538 atacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    |||||||| ||||||||| |||||||||||||||||||||||    
T  27713462 atacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 587
Target Start/End: Original strand, 25657767 - 25657860
Alignment:
Q  495 aatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    ||||| |||||||||||| ||||||| | |||||  ||| | | | ||||||||| ||||||||||||||||| ||||| || ||||||||||||    
T  25657767 aatcatatccctgctcaaaacgaacataaatcggtgaataagagattacaaactacaggcgccgtatataggcagaaca-cctaaaataaacacc 25657860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 586
Target Start/End: Complemental strand, 31722058 - 31722012
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacac 586  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  31722058 tacaaactaa-ggcgccgtatatagacggaacacccgaaaacaaacac 31722012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 33258579 - 33258630
Alignment:
Q  536 aaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||||  |||||||||||||||| | | ||||||||||||||||||||    
T  33258579 aaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacacc 33258630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 33109829 - 33109874
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaaca 520  Q
    |||||||||| |||||||||||||| ||| ||||| ||||||||||    
T  33109829 aacagcaaatattattaaacaatcaaatctctgcttaagacgaaca 33109874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 587
Target Start/End: Complemental strand, 6159866 - 6159827
Alignment:
Q  547 aaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  6159866 aaaggcgctgtatataggcggaacaccc-aaaataaacacc 6159827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 480 - 588
Target Start/End: Complemental strand, 42719605 - 42719495
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 577  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||  ||| |  | ||||||||| |||| ||||||||||| |||||| ||| |||    
T  42719605 caaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaa 42719506  T
Q  578 aataaacaccc 588  Q
    |||||||||||    
T  42719505 aataaacaccc 42719495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 505 - 588
Target Start/End: Complemental strand, 28967299 - 28967214
Alignment:
Q  505 ctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    ||||||||||||||||||||||||  || || | ||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  28967299 ctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccc 28967214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 588
Target Start/End: Complemental strand, 48098744 - 48098645
Alignment:
Q  491 aaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    ||||||| | || |||||||||||||||| ||||||||  || |  ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  48098744 aaacaattagattcctgctcaagacgaacggagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 481 - 583
Target Start/End: Complemental strand, 35337013 - 35336914
Alignment:
Q  481 aaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaat 580  Q
    ||||||||||||  ||||| |||| ||| ||||||||||||||||| ||   ||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  35337013 aaattttattaat-aatcagatccatgcacaagacgaacagagatcagat--aaaaagtacaaacaaaaggcgccgtatatagacggaacatccgaaaat 35336917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 563
Target Start/End: Complemental strand, 9262897 - 9262807
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatatag 563  Q
    |||||||||||||||||||||| || ||||| |||||||||||||| ||| ||  ||| |  | ||||||||| |||||||||||||||||    
T  9262897 aacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 573
Target Start/End: Original strand, 21983504 - 21983601
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 573  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| ||  |||  | |||||| |||  ||| ||||| |||||||||||||||||    
T  21983504 cagcaaattttattaaa-aatcagatccctgctcaagacgaacagagaccgatgaaatagaaaatataaatgaaaagcgccatatataggcggaacacc 21983601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 579
Target Start/End: Complemental strand, 52009279 - 52009173
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||||||| | || |||||||| ||||||||| ||||||||  ||| |  |  || |||||  |||||||||||||||||||||||||    
T  52009279 aacagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacac 52009180  T
Q  573 ccgaaaa 579  Q
    || ||||    
T  52009179 cctaaaa 52009173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 586
Target Start/End: Complemental strand, 46487670 - 46487621
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacac 586  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  46487670 aatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 41117595 - 41117710
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||||||||||||||||  | ||| ||||||||||||||||||||  ||  ||    | | ||||||| | ||||  ||||||||||||||||||    
T  41117595 aacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacac 41117694  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||||||||||||    
T  41117695 ccgaaaataaacaccc 41117710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 585
Target Start/End: Original strand, 19814847 - 19814957
Alignment:
Q  478 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaact-aaaggcgccgtatataggcggaacaccc 574  Q
    ||||||||||||| ||||| || |||||||||||||||||||||||| ||   || || | | |||||||| |||||||  ||||||| || ||||||||    
T  19814847 agcaaattttatttaacaaccagatccctgctcaagacgaacagagaccgataaaacagagagtacaaactaaaaggcgttgtatataagcagaacaccc 19814946  T
Q  575 gaaaataaaca 585  Q
     ||||||||||    
T  19814947 aaaaataaaca 19814957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 16832646 - 16832762
Alignment:
Q  475 aacagcaaattttattaaa-caatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaaca 571  Q
    |||| |||||||||||||| ||| || | |||| |||||||| |||||| |||||  || |  | ||||||||| |||||||| | ||||||||||||||    
T  16832646 aacaacaaattttattaaaacaaccagaccccttctcaagacaaacagaaatcggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaaca 16832745  T
Q  572 cccgaaaataaacaccc 588  Q
    ||  |||||||||||||    
T  16832746 ccaaaaaataaacaccc 16832762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 587
Target Start/End: Original strand, 38636861 - 38636974
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaa----aatacaaactaaaggcgccgtatataggcggaac 570  Q
    |||||||||||||||||||||| ||  |||| | ||| |||||||||||| |||  | ||||    | ||||||| | ||||||||||| ||||||||||    
T  38636861 aacagcaaattttattaaacaaccaggtccccgttcaggacgaacagagaccgg--tgaaaatgagactacaaacaagaggcgccgtat-taggcggaac 38636957  T
Q  571 acccgaaaataaacacc 587  Q
    ||| |||||||||||||    
T  38636958 acctgaaaataaacacc 38636974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 522
Target Start/End: Original strand, 2061464 - 2061506
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacaga 522  Q
    |||||||||||||||| ||| |||||||| |||||||||||||    
T  2061464 caaattttattaaacagtcagatccctgcccaagacgaacaga 2061506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 581
Target Start/End: Original strand, 20632128 - 20632233
Alignment:
Q  479 gcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaa-ggcgccgtatataggcggaacacccg 575  Q
    |||||||||||| || || || || |||||| ||||||||| |||| |||  | ||| | ||||||||||||| ||||  |||||||||||||| |||||    
T  20632128 gcaaattttatttaaaaaacagattcctgcttaagacgaactgagaccggtgattcagagaatacaaactaaaaggcgttgtatataggcggaatacccg 20632227  T
Q  576 aaaata 581  Q
    ||||||    
T  20632228 aaaata 20632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 583
Target Start/End: Original strand, 35947998 - 35948044
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 583  Q
    ||||||||| |||| |||| |||||| ||||||||||||||||||||    
T  35947998 aatacaaacaaaagacgccatatataagcggaacacccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 587
Target Start/End: Complemental strand, 38930177 - 38930128
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccg-aaaataaacacc 587  Q
    ||||||| ||||| |||||||||||| |||||||||| ||||||||||||    
T  38930177 tacaaacgaaaggagccgtatataggtggaacacccgaaaaataaacacc 38930128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 579
Target Start/End: Complemental strand, 19432426 - 19432386
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    ||||||| ||||||||||||||||| ||||||| |||||||    
T  19432426 tacaaacaaaaggcgccgtatatagacggaacatccgaaaa 19432386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 32174341 - 32174373
Alignment:
Q  375 taaatttcatacactcattcaacatcatatttt 407  Q
    |||||||||||||||||||||||||| ||||||    
T  32174341 taaatttcatacactcattcaacatcttatttt 32174373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 555 - 587
Target Start/End: Original strand, 39420745 - 39420777
Alignment:
Q  555 cgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||||||||||||||||||||| ||||||    
T  39420745 cgtatataggcggaacacccgaaaatgaacacc 39420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 579
Target Start/End: Original strand, 43373784 - 43373824
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    |||||||||||||||  ||||||||||| ||||||||||||    
T  43373784 tacaaactaaaggcgttgtatataggcgaaacacccgaaaa 43373824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 12197702 - 12197817
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    ||||| |||||||||| |||||  | |||  ||||||||||||| |||||||||  ||||| | ||||||||||||||||| ||| ||||||||||||||    
T  12197702 aacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacac 12197801  T
Q  573 ccgaaaataaacaccc 588  Q
      ||||||||||||||    
T  12197802 gggaaaataaacaccc 12197817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 12442130 - 12442245
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    ||||| |||||||||| |||||  | |||  ||||||||||||| |||||||||  ||||| | ||||||||||||||||| ||| ||||||||||||||    
T  12442130 aacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacac 12442229  T
Q  573 ccgaaaataaacaccc 588  Q
      ||||||||||||||    
T  12442230 gggaaaataaacaccc 12442245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 567
Target Start/End: Original strand, 8843743 - 8843833
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcgg 567  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||| ||  ||| | | |||||||||| ||| |||||||||||||||||    
T  8843743 cagcaaattttattaaa-aatcaaatcccttctcaagacgaacagagaccggtgaaac-agaaatacaaacgaaatgcgccgtatataggcgg 8843833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 17656363 - 17656478
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||||||||||||||||||||||||  |||||||||| ||  || ||||| |||  ||    || ||| |||| ||||||| ||||||||| ||||||||    
T  17656363 aacagcaaattttattaaacaatcaggtccctgctcatgagcaatagagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacac 17656462  T
Q  573 ccgaaaataaacaccc 588  Q
    |||||||| |||||||    
T  17656463 ccgaaaattaacaccc 17656478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 30235809 - 30235857
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  30235809 tacaaactaaaggctccgtatataggcggaacatccgaaaacaaacacc 30235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 17720398 - 17720444
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 584  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  17720398 aatacaaactaaaggcgccgtatataggcagaacaccc-aaaataaac 17720444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 584
Target Start/End: Original strand, 5214941 - 5215044
Alignment:
Q  481 aaattttattaaacaatcacatccctgctcaagacgaacagagatcggaat--caaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 578  Q
    ||||||||||||| ||||| ||||||||  |||||||||||||| ||   |  || ||| |||||||||| ||||||||||||||||| |||||||||||    
T  5214941 aaattttattaaa-aatcagatccctgcataagacgaacagagaccgatgttacagaaagtacaaactaa-ggcgccgtatataggcgaaacacccgaaa 5215038  T
Q  579 ataaac 584  Q
    | ||||    
T  5215039 acaaac 5215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 518
Target Start/End: Original strand, 2613174 - 2613217
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaa 518  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  2613174 aacagcaaattttatttaacaatcagatccctactcaagacgaa 2613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 9831694 - 9831741
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 584  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||    
T  9831694 aatacaaactaaagacgtcgtatataggccgaccacccgaaaataaac 9831741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 579
Target Start/End: Original strand, 10248256 - 10248298
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaa 579  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||    
T  10248256 aatacaacctaaaggcgtcgtatataggcggaacaccctaaaa 10248298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 8862314 - 8862363
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccg-aaaataaacacc 587  Q
    ||||||| ||||||||||||||||| ||||||| ||| ||||||||||||    
T  8862314 tacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacacc 8862363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 551 - 587
Target Start/End: Complemental strand, 10552645 - 10552609
Alignment:
Q  551 gcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  10552645 gcgccgtatataggcggaacatccgaaaacaaacacc 10552609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 583
Target Start/End: Original strand, 41790961 - 41791005
Alignment:
Q  539 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 583  Q
    ||||||||||||  | |||||||||||||||||||| ||||||||    
T  41790961 tacaaactaaagatgtcgtatataggcggaacacccaaaaataaa 41791005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 37161 - 37047
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||| |||||||||||| |  |||||||||||||||||||||||| |||  || |  | ||||||||| |||| ||| ||||||||||||||||     
T  37161 aacaacaaaatttattaaacaacctgatccctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacat 37062  T
Q  573 ccgaaaataaacacc 587  Q
    |||||||||||||||    
T  37061 ccgaaaataaacacc 37047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 475 - 574
Target Start/End: Original strand, 6726046 - 6726147
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||||||||| || ||| |||||||||||||||||||||||  ||| |  | ||||||||| |||  |||||||||||||||||||||    
T  6726046 aacaacaaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacac 6726145  T
Q  573 cc 574  Q
    ||    
T  6726146 cc 6726147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 481 - 588
Target Start/End: Original strand, 42532892 - 42533001
Alignment:
Q  481 aaattttattaaacaatcacatccctgctcaagacgaacagagatcgga--atcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 578  Q
    ||||||||||| |||| || |||||||||||||||||||||||| |||   | |  | ||||||| | ||||||||||||||||||||||||||| | ||    
T  42532892 aaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaa 42532991  T
Q  579 ataaacaccc 588  Q
    ||||||||||    
T  42532992 ataaacaccc 42533001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 1321246 - 1321133
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||||||||| |||||| || |||||||||||| |||||||  ||| |  | |||||||||  | | ||||||||||||||||||| |    
T  1321246 aacaacaaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaac--acgacgccgtatataggcggaactc 1321149  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||||||||||||    
T  1321148 ccgaaaataaacaccc 1321133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 588
Target Start/End: Complemental strand, 3478800 - 3478688
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaact-aaaggcgccgtatataggcggaacacccg 575  Q
    |||||||||||||| ||||| || ||||||| ||||||| |||||||| |||    | | | | ||| || |||||||||||||||||||||||||||||    
T  3478800 cagcaaattttatttaacaaccagatccctgatcaagacaaacagagaccggtgaaagagagtgcaacctgaaaggcgccgtatataggcggaacacccg 3478701  T
Q  576 aaaataaacaccc 588  Q
    |||||||||||||    
T  3478700 aaaataaacaccc 3478688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 582
Target Start/End: Original strand, 28534134 - 28534240
Alignment:
Q  477 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc 574  Q
    ||||||||||||||||| || || |||  ||||||||||||||||||| |||  | | | | ||||||||  ||||||||||||||||||||||||||||    
T  28534134 cagcaaattttattaaa-aaccaaatctttgctcaagacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacaccc 28534232  T
Q  575 gaaaataa 582  Q
    ||||||||    
T  28534233 gaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 481 - 588
Target Start/End: Complemental strand, 33719413 - 33719305
Alignment:
Q  481 aaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 578  Q
    |||||||||||||||| || |||||||||||||||||||||||||||  ||| |  | ||||||||| || ||||| | ||||||||||||||  |||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaaca-tcgaaa 33719315  T
Q  579 ataaacaccc 588  Q
     |||||||||    
T  33719314 gtaaacaccc 33719305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 8745583 - 8745469
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||| |||||||||||||| ||||||  ||||||||||||||||  ||  || |  |||||| |||| | || |||||||||||||||||||||    
T  8745583 aacatcaaatattattaaacaatcaaatccctattcaagacgaacagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacac 8745484  T
Q  573 ccgaaaataaacaccc 588  Q
    ||||||| ||||||||    
T  8745483 ccgaaaa-aaacaccc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 585
Target Start/End: Original strand, 16828791 - 16828839
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 585  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  16828791 aatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaaca 16828839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 573
Target Start/End: Original strand, 47456706 - 47456800
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 573  Q
    |||||||||||||| || || ||| |||||||||||||||||||| |||  || || ||||||||||  |||||||| ||||||||||||||||||    
T  47456706 caaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacacc 47456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 587
Target Start/End: Original strand, 26385792 - 26385897
Alignment:
Q  480 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 577  Q
    |||| |||||| || | ||| |||||||||||||||||||||||| ||  || ||| ||| ||||||   ||| ||||||||||||||||||||||| ||    
T  26385792 caaaatttatttaatagtcagatccctgctcaagacgaacagagaccgatgattcagaaactacaaa---aagacgccgtatataggcggaacaccc-aa 26385887  T
Q  578 aataaacacc 587  Q
    ||||||||||    
T  26385888 aataaacacc 26385897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 537 - 584
Target Start/End: Complemental strand, 13312227 - 13312180
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 584  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||    
T  13312227 aatacaaactaaaggctttgtatataggcggaacacccgaaaataaac 13312180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 588
Target Start/End: Complemental strand, 36674859 - 36674809
Alignment:
Q  538 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    |||||||| ||||||| ||||||||||||||| | ||||||||||||||||    
T  36674859 atacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 6716363 - 6716478
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||| ||| | ||  |||||||||||||| ||| ||||  |  ||| || | |||||||| |||||| ||||||||||  ||||||||    
T  6716363 aacatcaaattttatttaaccaccaagtccctgctcaagacaaaccgagacagatgaaacagagaatacaaattaaaggggccgtatataaccggaacac 6716462  T
Q  573 ccgaaaataaacaccc 588  Q
    | ||||||||||||||    
T  6716463 ctgaaaataaacaccc 6716478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 586
Target Start/End: Complemental strand, 16954878 - 16954830
Alignment:
Q  538 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacac 586  Q
    |||||||  |||||| |||||||||||||||||| ||||||||||||||    
T  16954878 atacaaataaaaggcaccgtatataggcggaacatccgaaaataaacac 16954830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 44756021 - 44755907
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatc--ggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| |||||||||||||||||  | |||||||||||||||||||  |||||   ||| | ||  |||||||| |||||||  ||||||||||| ||||     
T  44756021 aacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaaca- 44755923  T
Q  573 ccgaaaataaacaccc 588  Q
    || |||||||||||||    
T  44755922 cctaaaataaacaccc 44755907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 9107605 - 9107491
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 572  Q
    |||| ||||||||||| || || |  ||||||||||||||||||||  |||| |  | ||||| ||||||||  |||||||||||||| ||||||||| |    
T  9107605 aacaacaaattttatttaaaaacctaatccctgctcaagacgaacaatgatcagtgattcaaagaatacaaatcaaaggcgccgtataaaggcggaacgc 9107506  T
Q  573 ccgaaaataaacacc 587  Q
     | ||||| ||||||    
T  9107505 acaaaaatgaacacc 9107491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 573
Target Start/End: Complemental strand, 9350136 - 9350067
Alignment:
Q  505 ctgctcaagacgaacagagatcggaat--caaaaaatacaaactaaaggcgccgtatataggcggaacacc 573  Q
    |||| |||||||||||||||||||  |  |||||| ||||||| || ||||||||||||||||||||||||    
T  9350136 ctgcacaagacgaacagagatcggtgttacaaaaagtacaaaccaa-ggcgccgtatataggcggaacacc 9350067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 572
Target Start/End: Original strand, 22567783 - 22567818
Alignment:
Q  537 aatacaaactaaaggcgccgtatataggcggaacac 572  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22567783 aatacaaacaaaaggcgccgtatataggcggaacac 22567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 40292637 - 40292685
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 524  Q
    |||| |||||||||||||| ||||| |||||| |||||||||||||||||    
T  40292637 aacaacaaattttattaaa-aatcagatccctcctcaagacgaacagaga 40292685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 585
Target Start/End: Complemental strand, 23983669 - 23983586
Alignment:
Q  504 cctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 585  Q
    ||||||||| ||||||| |||||||  | ||| | |||||||| |||||||  |||||||||||||| || || ||||||||||    
T  23983669 cctgctcaaaacgaacaaagatcggtgattcagagaatacaaattaaaggcatcgtatataggcggagcatccaaaaataaaca 23983586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 507 - 587
Target Start/End: Original strand, 654 - 736
Alignment:
Q  507 gctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 587  Q
    |||||||||||||| ||||| |  | ||| | |||||||||||||| || |||||||| | ||||||||||||||||||||||    
T  654 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacacc 736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 588
Target Start/End: Complemental strand, 58556 - 58467
Alignment:
Q  501 atccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 588  Q
    |||||||||||||||||| ||||| |||  || || | |||| |||| ||||||||||||||||||  |||||||| |||||||| ||||    
T  58556 atccctgctcaagacgaaaagagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccc 58467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 1347 - 1393
Alignment:
Q  542 aaactaaaggcgccgtatataggcggaacacccg-aaaataaacacc 587  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacacc 1393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 426555 - 426604
Alignment:
Q  475 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 524  Q
    |||||||||||||||| || ||||| |||||| |||||||||| ||||||    
T  426555 aacagcaaattttatttaaaaatcagatccctactcaagacgatcagaga 426604  T

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