View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_31 (Length: 336)
Name: NF8199_low_31
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 54714434 - 54714240
Alignment:
| Q |
125 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgatt |
224 |
Q |
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| T |
54714434 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccggcagcagcactattcagaataccagcttcatctttcaccagttgatt |
54714335 |
T |
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| Q |
225 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattgaagtttttgccatagtgt |
319 |
Q |
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| T |
54714334 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattgaagtttttgccatagtgt |
54714240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 54721335 - 54721193
Alignment:
| Q |
153 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
252 |
Q |
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| T |
54721335 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccaacttcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
54721236 |
T |
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| Q |
253 |
ctatagccattgagaaataatgccacagcaaggacaactagaa |
295 |
Q |
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| T |
54721235 |
ctatagccattcagaattaatgccacagcaaggacaagtagaa |
54721193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 54714539 - 54714455
Alignment:
| Q |
17 |
accttgaacaatagctgttatatttaccacataatttattaatattgaaacaatagtagatcaccaatttgtttatccttttgtg |
101 |
Q |
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| T |
54714539 |
accttgaacaatagctgttatatttaccacataacttattaatattgaaacaatagtagatcaccaatttgtttatccttttgtg |
54714455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 54721357 - 54721298
Alignment:
| Q |
200 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
256 |
Q |
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| T |
54721357 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
54721298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 5297488 - 5297346
Alignment:
| Q |
153 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
252 |
Q |
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| T |
5297488 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccagattcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
5297389 |
T |
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| Q |
253 |
ctatagccattgagaaataatgccacagcaaggacaactagaa |
295 |
Q |
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| T |
5297388 |
ctatagccattcagaattaatgccacagcaaggacaactagaa |
5297346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 5302868 - 5302783
Alignment:
| Q |
201 |
agcttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaa |
289 |
Q |
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||||||||||||| ||||||||||| ||||||| |||| || ||||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacc--ca-cagcagcactatagccattcacaaataatgccacaacaaggacaa |
5302783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 5297510 - 5297451
Alignment:
| Q |
200 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
256 |
Q |
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|||||||||||||||| || ||||||| ||||||| ||||| |||||||||||||||| |
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| T |
5297510 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
5297451 |
T |
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