View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_42 (Length: 296)
Name: NF8199_low_42
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 46 - 288
Target Start/End: Original strand, 43600989 - 43601231
Alignment:
| Q |
46 |
ctaatgaagttattatcggtaggaacatnnnnnnnctcatatttggtatttgttctggaaaaaatactgttagattattggcaggagagagggacatttt |
145 |
Q |
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| T |
43600989 |
ctaatgaagttattatcggtaggaacataaaaaaactcatatttggtatttgttctggaaaaaatactgttagattattggcaggagagagggacatttt |
43601088 |
T |
|
| Q |
146 |
aatttactctatttttattgttttgaaacgatactttttctttactcaataaaagctctttcttaattatttttacaaatctcattcatgagaatgtaat |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43601089 |
aatttactctatttttattgttttgaaacgatactttttctttacttaataaaagcactttcttaattatatttacaaatctcattcatgagaatgtaat |
43601188 |
T |
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| Q |
246 |
aatgtaaaatgaaatgaactatatgcgtatctttcttcttctc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43601189 |
aatgtaaaatgaaatgaactatatgcgtatctttcttcttctc |
43601231 |
T |
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