View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_44 (Length: 290)
Name: NF8199_low_44
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 30668641 - 30668363
Alignment:
| Q |
1 |
tagcccttgcgatattcagaattagcttcccacctggtttccaccacttatagacatctgactatagcgacattgcatttgaagatgaatgttaatttga |
100 |
Q |
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| T |
30668641 |
tagcccttgcgatattcagaattagcttcccacctggtttccaccacttatagacatctgactatagcgacattgcatttgaagatgaatgttaatttga |
30668542 |
T |
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| Q |
101 |
atgaacaaatgtaatgnnnnnnntagaaacattgagatatgagtaaaagagacctatgtaacaaataaatacctgtccgaagcaaaaaactggaaccagg |
200 |
Q |
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| T |
30668541 |
ctgaacaaatgtaatgaaaaaaatagaaacattgacatatgagtagaggagacctatgtaacaaataaatacctgtccgaagcaaaaaactggaaccagg |
30668442 |
T |
|
| Q |
201 |
ggtttccctttctcgattgctatgcggacaaatcctcttcttgccttgagaaatgcaatctagaaagtaaataattctt |
279 |
Q |
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| T |
30668441 |
ggtttccctttctccattgctatgcggacaaatcctcttcttgccttgagaaatgcaatctagaaagtaaataattctt |
30668363 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 10112065 - 10112149
Alignment:
| Q |
163 |
aaataaatacctgtccgaagcaaaaaactggaaccaggggtttccctttctcgattgctatgcggacaaatcctcttcttgcctt |
247 |
Q |
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| T |
10112065 |
aaataagtacctgaccaaagcagaaaacaggaaccaagggatgacccttctccaatgctatgcggacaaaacctcttcttgcctt |
10112149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 13198499 - 13198590
Alignment:
| Q |
163 |
aaataaatacctgtccgaagcaaaaaactggaaccaggggtttccctttctcgattgctatgcggacaaatcctcttcttgccttgagaaat |
254 |
Q |
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| T |
13198499 |
aaatatatacctgaccaaagcagaaaactggaacaagggggtgacccatctccattgctattcgaacaaatcctcttctttctttgagaaat |
13198590 |
T |
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