View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8199_low_5 (Length: 498)
Name: NF8199_low_5
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 482
Target Start/End: Complemental strand, 32979047 - 32978587
Alignment:
| Q |
20 |
agtgagatgaaaccgtgtctggcaaacaatttctgcagattttccagactagccatctttaatttcatccatcatggaatttgcttgacaaggagattga |
119 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32979047 |
agtgagttgaaaccgtgtatggcaaacaatttctgcagattttccagactagccatctttaatttcatccatcatggaatttgcttgacaaggagattga |
32978948 |
T |
|
| Q |
120 |
ctaagattataccattgttgaatccaaatactccgccatgcataacttggattgtgtt-aatatagttgaactaagatattcacacttgagaaaatattt |
218 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32978947 |
ctaagattatacaattgctgaatccaaatactccaccacgcataacttgaattgtgttcaatatagttgaactaagatattcacacttgagaaaatattt |
32978848 |
T |
|
| Q |
219 |
agctttgaataatccaatgaaaaataacttggattcgtcattaatttctatgattgtttatcaagcattgcatataattaaaagtaccaagtcttttgaa |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32978847 |
agctttgaataatccaatgaaaaattacttggattcgtcattaatttctatgattgtttatcaagcattgcatataattaaaagtaccaagtcttttgaa |
32978748 |
T |
|
| Q |
319 |
acatgtgccacgtaccttcactcttatagaaaacggtcataagaaatctaatgaataacctttggaatgctcgcgattacgactccattaaaagaaattc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||| ||| |
|
|
| T |
32978747 |
acatgtgccacgtaccttcactcttatagaaaacggtcataagaaatctaatgaataacatgttga---ctcgcgattacgactccattaaaagaagttc |
32978651 |
T |
|
| Q |
419 |
atcattttctcaatttcattactaagagatatatgtagtaatatgaatttttgtgtgtagattg |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32978650 |
atcattttctcaatttcattactaagagatatatgtaataatatgaatttttgtgtgtagattg |
32978587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University