View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8199_low_53 (Length: 253)

Name: NF8199_low_53
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8199_low_53
NF8199_low_53
[»] chr2 (12 HSPs)
chr2 (15-253)||(3815684-3815921)
chr2 (29-98)||(42882596-42882665)
chr2 (29-100)||(3816224-3816295)
chr2 (124-215)||(3816368-3816459)
chr2 (124-215)||(42882455-42882546)
chr2 (124-199)||(42808648-42808723)
chr2 (124-215)||(42807371-42807462)
chr2 (127-221)||(5289762-5289856)
chr2 (169-216)||(29132788-29132835)
chr2 (141-215)||(5847550-5847624)
chr2 (124-168)||(304406-304450)
chr2 (127-215)||(34618922-34619010)
[»] chr6 (6 HSPs)
chr6 (124-216)||(5741511-5741603)
chr6 (18-100)||(26622166-26622248)
chr6 (18-100)||(26728144-26728226)
chr6 (124-216)||(5741177-5741269)
chr6 (21-100)||(5741345-5741424)
chr6 (127-215)||(11599968-11600056)
[»] chr3 (8 HSPs)
chr3 (29-216)||(36754066-36754272)
chr3 (140-214)||(2451925-2451999)
chr3 (169-215)||(25227392-25227438)
chr3 (124-216)||(4041094-4041186)
chr3 (125-208)||(4040836-4040919)
chr3 (139-214)||(45004495-45004569)
chr3 (169-214)||(51147359-51147404)
chr3 (169-221)||(7790010-7790062)
[»] chr8 (13 HSPs)
chr8 (90-209)||(45155926-45156045)
chr8 (15-216)||(7130548-7130768)
chr8 (90-217)||(7130033-7130160)
chr8 (90-215)||(45156395-45156520)
chr8 (37-97)||(7130204-7130264)
chr8 (167-216)||(2784956-2785005)
chr8 (158-221)||(39046575-39046638)
chr8 (36-99)||(39872104-39872166)
chr8 (181-215)||(9512531-9512565)
chr8 (127-217)||(14097568-14097658)
chr8 (171-216)||(9511682-9511727)
chr8 (90-154)||(39870881-39870945)
chr8 (168-216)||(43693717-43693765)
[»] chr4 (17 HSPs)
chr4 (90-215)||(4674937-4675062)
chr4 (90-216)||(40361703-40361828)
chr4 (123-216)||(51721509-51721601)
chr4 (158-216)||(26973306-26973364)
chr4 (139-208)||(40361207-40361276)
chr4 (125-194)||(53259741-53259810)
chr4 (168-216)||(21713317-21713365)
chr4 (169-216)||(20394205-20394252)
chr4 (168-215)||(31825881-31825928)
chr4 (181-215)||(39834817-39834851)
chr4 (167-216)||(26251609-26251658)
chr4 (124-197)||(53260273-53260345)
chr4 (139-215)||(26251385-26251460)
chr4 (167-215)||(26973966-26974014)
chr4 (171-215)||(32304840-32304884)
chr4 (171-215)||(45864407-45864451)
chr4 (127-215)||(52031632-52031719)
[»] chr1 (15 HSPs)
chr1 (106-215)||(11435287-11435396)
chr1 (29-97)||(11434819-11434887)
chr1 (126-216)||(28485812-28485902)
chr1 (168-221)||(46923659-46923712)
chr1 (15-49)||(11435183-11435217)
chr1 (169-215)||(46090135-46090181)
chr1 (124-177)||(11434689-11434742)
chr1 (48-100)||(37919779-37919831)
chr1 (172-215)||(48996670-48996713)
chr1 (181-215)||(3872137-3872171)
chr1 (130-216)||(18169181-18169267)
chr1 (143-216)||(30308265-30308338)
chr1 (124-177)||(44528007-44528060)
chr1 (60-100)||(11435209-11435249)
chr1 (168-216)||(48569427-48569475)
[»] scaffold0276 (1 HSPs)
scaffold0276 (106-207)||(3603-3705)
[»] chr7 (5 HSPs)
chr7 (127-216)||(46273524-46273613)
chr7 (168-216)||(39476415-39476463)
chr7 (130-215)||(47441554-47441639)
chr7 (127-209)||(4034105-4034187)
chr7 (126-212)||(36653215-36653301)
[»] chr5 (7 HSPs)
chr5 (106-215)||(25868011-25868120)
chr5 (124-215)||(6408545-6408636)
chr5 (169-215)||(43275515-43275561)
chr5 (139-216)||(21102298-21102375)
chr5 (140-216)||(1080864-1080940)
chr5 (168-216)||(7634106-7634154)
chr5 (127-215)||(34954921-34955009)
[»] scaffold0051 (1 HSPs)
scaffold0051 (140-215)||(21103-21178)
[»] scaffold0408 (1 HSPs)
scaffold0408 (127-217)||(7911-8001)
[»] scaffold0007 (1 HSPs)
scaffold0007 (127-215)||(256391-256479)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 3815921 - 3815684
Alignment:
Q  15 aagaaccacacatccaactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacgcttgtataaaaatta 114  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  3815921 aagaaccacatatccaactcttgcacgtgaatatgcaaaaacattgtgaatatggcaaaacaatacttgcgtgagttaactcacgcttgtgtaaaaatta 3815822  T
Q  115 agtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaatt 214  Q
    |||| |||||||||||||||| || ||||||| || ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  3815821 agttccttattttttacacttgca-tagttaattagcgcagaattattttgatcatggctgcaagacgcgagcgaaaagtacaaggtgaagagcagaatt 3815723  T
Q  215 ctcttttattcattcatgtacttactttgctttggtagg 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3815722 ctcttttattcattcatgtacttactttgctttggtagg 3815684  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 42882665 - 42882596
Alignment:
Q  29 caactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcac 98  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  42882665 caactcttgcacgtgaatatgcaaaaacattgtgaatatggcaaaacaatacctgcgtgagttaactcac 42882596  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 3816224 - 3816295
Alignment:
Q  29 caactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacgc 100  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||| ||||    
T  3816224 caactcttgcacgtgaatatgcaaaaacattatgaatatagcaaaacaatacttgcgtgagttaacttacgc 3816295  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 3816368 - 3816459
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||||| | |||||||| ||||||| || ||||||||||||||||||||| ||| |||||||| ||||| | ||||||||||||||    
T  3816368 ttttttacacttgcgttagttaattaacgcataaatattttgatcatggctgcaaggcgcaagcgaaaaatgcagagcgaagagcagaattc 3816459  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 42882546 - 42882455
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||||| | ||||||||||| || ||  |||||||  ||||||||||| | || ||||||||||||||||||||||||||||||||    
T  42882546 ttttttacacttgcgttagttaactagcgtaggggtattttagtcatggctgcagggcgtgagcgaaaagtgcagggtgaagagcagaattc 42882455  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 42808648 - 42808723
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagg 199  Q
    |||||||||||| | ||||||||||||||||| |||||||| |||||||||||| |  |||||||||| |||||||    
T  42808648 ttttttacacttgcgttagttaactaacgcaggagtattttcatcatggctgcagggtgcgagcgaaaggtgcagg 42808723  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 42807462 - 42807371
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||||| | ||||||||||||||||  ||||||||  | |||| |||| | ||||| |||||||| ||||| || |||||||||||    
T  42807462 ttttttacacttgcgttagttaactaacgcatgagtattttcgttatggttgcagggcgcgaacgaaaagtacagggggaggagcagaattc 42807371  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 5289856 - 5289762
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattctctttt 221  Q
    ||||||||| |  ||||||||||||||||  ||||||||  ||||| |||| || |||||||||| |||| |||||||||| | |||||| ||||    
T  5289856 tttacacttgcgctagttaactaacgcaggggtattttgggcatggttgcaggatgcgagcgaaatgtgctgggtgaagagtaaaattctatttt 5289762  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 29132788 - 29132835
Alignment:
Q  169 atggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||||||| ||||||||||||| |||| |||||||||||| ||||||    
T  29132788 atggctgcaggacgcgagcgaaatgtgctgggtgaagagcaaaattct 29132835  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 5847624 - 5847550
Alignment:
Q  141 agttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| ||||||| ||||||    ||| ||||| | |||||||||||||||  ||||||||||||||||||    
T  5847624 agttaactagcgcagaaatatttttggaatgactgcagggcgcgagcgaaaagtgttgggtgaagagcagaattc 5847550  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 304406 - 304450
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatc 168  Q
    |||||||||||| ||||||||||||||| |||  |||||||||||    
T  304406 ttttttacacttgcattagttaactaacacaggggtattttgatc 304450  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 34619010 - 34618922
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| || || ||||||| || ||  ||||||||| |||||||||| |  |||||||||| |||| || | |||||||||||||    
T  34619010 tttacacttgcactaattaactagcgtaggggtattttgagcatggctgcagggtgcgagcgaaatgtgctggttaaagagcagaattc 34618922  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 5741511 - 5741603
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||||| | |||||||||||||||||  |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  5741511 ttttttacacttgcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaattct 5741603  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 26622166 - 26622248
Alignment:
Q  18 aaccacacatccaactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacgc 100  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||  |||||||||||||||    
T  26622166 aaccactcatccaactcttgcacgtgaatatgcaaaaacaatgtgaatatgacaaaacaatatttgtgtgagttaactcacgc 26622248  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 26728144 - 26728226
Alignment:
Q  18 aaccacacatccaactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacgc 100  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||  |||||||||||||||    
T  26728144 aaccactcatccaactcttgcacgtgaatatgcaaaaacaatgtgaatatgacaaaacaatatttgtgtgagttaactcacgc 26728226  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 5741269 - 5741177
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||||| | |||| |||||| ||||   |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  5741269 ttttttacacttgcgttagataactagcgcattggtattttggtcatggctgcaggacgcgagcaaaaagtgcagggtgaagagcagaattct 5741177  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 5741424 - 5741345
Alignment:
Q  21 cacacatccaactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacgc 100  Q
    |||||||||||||||||||  |||||||||||||  ||||| ||||||||||||||| |||||  || ||||||||||||    
T  5741424 cacacatccaactcttgcatatgaatatgcaaaaatattgtaaatatggcaaaacaacacttgtgtgggttaactcacgc 5741345  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 11599968 - 11600056
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||||  |||||||||| |||||| | |||||| ||||||||||| |  |||||||||| |||| |||||||||||| |||||    
T  11599968 tttacacttacgctagttaactagcgcagaggcattttggtcatggctgcagggtgcgagcgaaatgtgctgggtgaagagcaaaattc 11600056  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 36754066 - 36754272
Alignment:
Q  29 caactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacgc-------------------ttgtataaa 109  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||                    ||||||||    
T  36754066 caactcttgcacgtgaatatgcaaaaacattgtgaatatggcaaaacaatacttgcgtgagttaactcacgcaacgtgacttaagttacgtatgtataaa 36754165  T
Q  110 aattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagca 209  Q
    || |||||   || ||| |||||||| | |||||||||||||||||  |||||||| || | | |||||| || |||||||||||||||| |||||||||    
T  36754166 aactaagtcaattttttcttacacttgcgttagttaactaacgcaggggtattttggtcgtagttgcaaggcgtgagcgaaaagtgcaggatgaagagca 36754265  T
Q  210 gaattct 216  Q
    |||||||    
T  36754266 gaattct 36754272  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 2451925 - 2451999
Alignment:
Q  140 tagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaatt 214  Q
    ||||||||||||||||  | ||||||| ||||||| ||||  |||||||||| |||| |||||||||||||||||    
T  2451925 tagttaactaacgcaggggcattttgagcatggctacaaggtgcgagcgaaatgtgctgggtgaagagcagaatt 2451999  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 25227392 - 25227438
Alignment:
Q  169 atggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  25227392 atggctgcaggacgcgagcgaaaagtgcagggggaagagcagaattc 25227438  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 4041094 - 4041186
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||||| | ||||||||||| | ||   |||||||| ||||| ||||| | | |||||||||||||||||||| ||||||| |||||    
T  4041094 ttttttacacttgcgttagttaactagcacatgggtattttggtcatgactgcagggcacgagcgaaaagtgcagggtggagagcaggattct 4041186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 4040919 - 4040836
Alignment:
Q  125 tttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagc 208  Q
    ||||||||||| | |||||||| || |||||   ||||||| ||||||||||| | ||| || ||||| |||||||||||||||    
T  4040919 tttttacacttgcgttagttaattagcgcagggatattttggtcatggctgcagggcgcaagtgaaaaatgcagggtgaagagc 4040836  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 45004495 - 45004569
Alignment:
Q  139 ttagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaatt 214  Q
    |||||||||||||| ||  ||||||||| || |||||||   ||||||||||||||||| || |||||||||||||    
T  45004495 ttagttaactaacgtaggggtattttgagcaaggctgcagagcgcgagcgaaaagtgca-ggagaagagcagaatt 45004569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 51147404 - 51147359
Alignment:
Q  169 atggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaatt 214  Q
    ||||||||| | ||||||||||||||||||||  ||||||||||||    
T  51147404 atggctgcagggcgcgagcgaaaagtgcaggggaaagagcagaatt 51147359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 7790010 - 7790062
Alignment:
Q  169 atggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattctctttt 221  Q
    ||||||||| ||||||| ||||||||||| || |||||| | |||||||||||    
T  7790010 atggctgcaggacgcgaacgaaaagtgcatggagaagagtaaaattctctttt 7790062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 45156045 - 45155926
Alignment:
Q  90 ttaactcacgcttgtataaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcga 189  Q
    |||| |||||| ||| ||||||||||||| |||||||||||||||||  |||||||| || ||||  ||||||||| ||||||||| | | |||||||||    
T  45156045 ttaagtcacgcatgtgtaaaaattaagttccttattttttacacttatgttagttaattagcgcaagagtattttggtcatggctgtagggcgcgagcga 45155946  T
Q  190 aaagtgcagggtgaagagca 209  Q
    ||||||||||||||||||||    
T  45155945 aaagtgcagggtgaagagca 45155926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 7130548 - 7130768
Alignment:
Q  15 aagaaccacacatccaactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactca----------------- 97  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||                     
T  7130548 aagaaccacacaaccaactgttgcacgtgaatatgcaaaaacattgtgaatatgacaaaacaatacttgcgtgagttaactcatgcagcgtgacttaagt 7130647  T
Q  98 --cgcttgtataaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtg 195  Q
      ||| ||  |||||| |||||   ||||||||||||||| | ||||||||||||| |||  |||||||  |||| | || ||| |||||||||||||||    
T  7130648 cacgcatgcgtaaaaactaagtcgtttattttttacacttgcgttagttaactaacacaggggtattttagtcatagttgtaaggcgcgagcgaaaagtg 7130747  T
Q  196 cagggtgaagagcagaattct 216  Q
    ||||||||||||||| |||||    
T  7130748 cagggtgaagagcaggattct 7130768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 7130160 - 7130033
Alignment:
Q  90 ttaactcacgcttgtataaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcga 189  Q
    |||| |||||| |||||||||| |||||   || | ||||||||||  |||| ||||||| ||||||  ||||||||||||| ||||| |||||||||||    
T  7130160 ttaagtcacgcatgtataaaaactaagtcaattttcttttacacttgtattaattaactagcgcagagatattttgatcatgactgcaggacgcgagcga 7130061  T
Q  190 aaagtgcagggtgaagagcagaattctc 217  Q
    ||| |||||||| |||||||||||||||    
T  7130060 aaaatgcagggtaaagagcagaattctc 7130033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 45156395 - 45156520
Alignment:
Q  90 ttaactcacgcttgtataaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcga 189  Q
    |||| |||||| ||| |||||||||| || | | ||||||||||||   ||||||||||||||||| ||| ||||| ||||||||||| | ||||  |||    
T  45156395 ttaagtcacgcatgtgtaaaaattaaattccgttttttttacacttgtgttagttaactaacgcaggagttttttggtcatggctgcagggcgcggacga 45156494  T
Q  190 aaagtgcagggtgaagagcagaattc 215  Q
    ||||||||||||||||||||| ||||    
T  45156495 aaagtgcagggtgaagagcaggattc 45156520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 7130264 - 7130204
Alignment:
Q  37 gcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactca 97  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  7130264 gcacttgagtatgcaaaaacattgtgaatatggcaaaacaatacttgcgtgagtaaactca 7130204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 2785005 - 2784956
Alignment:
Q  167 tcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||||||||| | | |||||||||||||||||| |||||||||||||||    
T  2785005 tcatggctgcagggcacgagcgaaaagtgcagggagaagagcagaattct 2784956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 39046638 - 39046575
Alignment:
Q  158 gtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattctctttt 221  Q
    |||||||  ||||||||||| ||||||||||||||||||||||   |||||| |||||| ||||    
T  39046638 gtattttcgtcatggctgcaggacgcgagcgaaaagtgcaggggagagagcataattctttttt 39046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 39872104 - 39872166
Alignment:
Q  36 tgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacg 99  Q
    ||||||||||||||| ||| |||||||||||| | ||||||||||  || ||||||||||||||    
T  39872104 tgcacgtgaatatgctaaaacattgtgaatat-gaaaaacaatacccgcatgagttaactcacg 39872166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 9512531 - 9512565
Alignment:
Q  181 cgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||| |||||||||||||||||||||||||||    
T  9512531 cgcgagcaaaaagtgcagggtgaagagcagaattc 9512565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 14097568 - 14097658
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattctc 217  Q
    ||||||||| | ||||||||||| | || | ||||||||  || || || | | |||||||||||||||||||| |||||||| |||||||    
T  14097568 tttacacttgcgttagttaactatcacataggtattttgggcaaggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattctc 14097658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 9511727 - 9511682
Alignment:
Q  171 ggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||||| ||||||| |||||||||||||| || ||||||||||||    
T  9511727 ggctgcaggacgcgaacgaaaagtgcagggggatgagcagaattct 9511682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 39870945 - 39870881
Alignment:
Q  90 ttaactcacgcttgtataaaaattaagtttcttattttttacacttacattagttaactaacgca 154  Q
    |||| |||||| ||| ||||||||||||| | | |||||||||||| | ||||||||||| ||||    
T  39870945 ttaagtcacgcatgtgtaaaaattaagttccgttttttttacacttgcgttagttaactagcgca 39870881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 43693717 - 43693765
Alignment:
Q  168 catggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||| | ||||||| ||| ||||||||||||||||| ||||||    
T  43693717 catggctgcagggcgcgagcaaaatgtgcagggtgaagagcaaaattct 43693765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 4675062 - 4674937
Alignment:
Q  90 ttaactcacgcttgtataaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcga 189  Q
    |||| |||||| ||| ||||||| | ||  |||||||||||||||| ||||||||||||| | ||   |||||||| ||||| ||||| | |||||||||    
T  4675062 ttaagtcacgcatgtgtaaaaataaggtcccttattttttacacttgcattagttaactagcacatgggtattttggtcatgactgcagggcgcgagcga 4674963  T
Q  190 aaagtgcagggtgaagagcagaattc 215  Q
    ||||||||||||||||||||| ||||    
T  4674962 aaagtgcagggtgaagagcaggattc 4674937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 40361703 - 40361828
Alignment:
Q  90 ttaactcacgcttgtataaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcga 189  Q
    |||| |||||| ||| ||||||||||||  | | |||||||||| |||  |||||||||| |||||   ||||||| ||||||||||| | |||||||||    
T  40361703 ttaagtcacgcatgtgtaaaaattaagtcccgt-ttttttacacgtacgctagttaactagcgcagggatattttggtcatggctgcagggcgcgagcga 40361801  T
Q  190 aaagtgcagggtgaagagcagaattct 216  Q
    |||||||||||||||||| ||||||||    
T  40361802 aaagtgcagggtgaagagaagaattct 40361828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 51721509 - 51721601
Alignment:
Q  123 attttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||||||||||| | ||||||||||||||||  || ||||||| ||| |||||| | ||||||||||||||| | ||||||||||| ||||||    
T  51721509 attttttacacttgcgttagttaactaacgcaagagcattttgaacatagctgcagggcgcgagcgaaaagtgta-ggtgaagagcaaaattct 51721601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 26973364 - 26973306
Alignment:
Q  158 gtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||  |||||| |||| || |||||||||||||||||||||||||||| ||||||    
T  26973364 gtattttcgtcatggttgcaggatgcgagcgaaaagtgcagggtgaagagcaaaattct 26973306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 40361276 - 40361207
Alignment:
Q  139 ttagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagc 208  Q
    |||||||| ||||||||  |||||||  ||||||||||||  |||||||||||||||||| ||| |||||    
T  40361276 ttagttaattaacgcaggggtattttcgtcatggctgcaaagcgcgagcgaaaagtgcagagtggagagc 40361207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 53259810 - 53259741
Alignment:
Q  125 tttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagt 194  Q
    ||||||||||| | ||| ||||||||||||| ||||||||  |||| |||||| ||||||| ||||||||    
T  53259810 tttttacacttgcgttaattaactaacgcaggagtattttcgtcatagctgcaggacgcgaacgaaaagt 53259741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 21713317 - 21713365
Alignment:
Q  168 catggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||| | ||||||| ||| ||||||||||||||||||||||||    
T  21713317 catggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattct 21713365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 20394205 - 20394252
Alignment:
Q  169 atggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||||||| | |||||||||||||||||||| |||||||| ||||||    
T  20394205 atggctgcagggcgcgagcgaaaagtgcagggggaagagcaaaattct 20394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 31825881 - 31825928
Alignment:
Q  168 catggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||    
T  31825881 catggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattc 31825928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 39834817 - 39834851
Alignment:
Q  181 cgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||||||||||||| ||||||||||||||    
T  39834817 cgcgagcgaaaagtgcagggggaagagcagaattc 39834851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 26251609 - 26251658
Alignment:
Q  167 tcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||| ||||| | ||||| ||||||||||| ||||||||||||||||||    
T  26251609 tcatgactgcagggcgcgatcgaaaagtgcaaggtgaagagcagaattct 26251658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 53260273 - 53260345
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgca 197  Q
    |||||||||||| ||||| |||||||| | | || ||||||  ||||||||||| |||||||||||||| ||||    
T  53260273 ttttttacacttgcattaattaactaatgtaaaa-tattttcgtcatggctgcaggacgcgagcgaaaaatgca 53260345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 26251460 - 26251385
Alignment:
Q  139 ttagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||||| ||||  || ||||| ||||||| |||| | ||||||||||||||| |||| | ||||||||||||    
T  26251460 ttagttaactagcgcaagagcatttttatcatggatgcagggcgcgagcgaaaagtgaaggg-ggagagcagaattc 26251385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 26973966 - 26974014
Alignment:
Q  167 tcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||| ||||| | || ||||||||||||||||| ||||||||||||||    
T  26973966 tcatgactgcagggcgtgagcgaaaagtgcagggagaagagcagaattc 26974014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 32304884 - 32304840
Alignment:
Q  171 ggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||||||||||| ||| |||||||||||||| || |||||    
T  32304884 ggctgcaagacgcgagcaaaatgtgcagggtgaagaacataattc 32304840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 45864451 - 45864407
Alignment:
Q  171 ggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||  ||||||||||||||||| |||||||||||| |||||    
T  45864451 ggctgcagcacgcgagcgaaaagtgctgggtgaagagcataattc 45864407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 52031719 - 52031632
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| | |||||||||||||||| | ||||||| | || ||||||| |||||||| |    |||| ||||||||||||||||||    
T  52031719 tttacacttgcgttagttaactaacgca-aggtattttaagcaaggctgcaggacgcgagtgttttgtgctgggtgaagagcagaattc 52031632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 11435287 - 11435396
Alignment:
Q  106 taaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaag 205  Q
    |||||| |||||  |||||||||||||||| | ||||||||||| || |  ||||||||| |||||| |||| | |||||| ||||||||||||||||||    
T  11435287 taaaaactaagtcccttattttttacacttgcgttagttaactagcgtatgagtattttggtcatggttgcagggcgcgagtgaaaagtgcagggtgaag 11435386  T
Q  206 agcagaattc 215  Q
    ||||||||||    
T  11435387 agcagaattc 11435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 11434887 - 11434819
Alignment:
Q  29 caactcttgcacgtgaatatgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactca 97  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||| |||||||    
T  11434887 caactcttgcacgtgaatatgcaaaaacattgtgaatatgacaaaacaatacttgtgtgagctaactca 11434819  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 28485902 - 28485812
Alignment:
Q  126 ttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||| |||||||||||||||| |  || |||||    ||||||||| | |||||||||||||||||||| |||||||||||||||    
T  28485902 ttttacacttgcattagttaactaacgtaagagcatttttgggatggctgcaggtcgcgagcgaaaagtgcagggggaagagcagaattct 28485812  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 46923712 - 46923659
Alignment:
Q  168 catggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattctctttt 221  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||||||    
T  46923712 catggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattctctttt 46923659  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 11435183 - 11435217
Alignment:
Q  15 aagaaccacacatccaactcttgcacgtgaatatg 49  Q
    |||||||||||||||||||||||||||||||||||    
T  11435183 aagaaccacacatccaactcttgcacgtgaatatg 11435217  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 46090181 - 46090135
Alignment:
Q  169 atggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| |||||||||||||||||||||  ||||||||||||||    
T  46090181 atggctgcaggacgcgagcgaaaagtgcaggaggaagagcagaattc 46090135  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 11434742 - 11434689
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgca 177  Q
    |||||||||||| | ||||||||||| ||||| ||||||||| |||||||||||    
T  11434742 ttttttacacttgcgttagttaactagcgcaggagtattttggtcatggctgca 11434689  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 37919831 - 37919779
Alignment:
Q  48 tgcaaaagcattgtgaatatggcaaaacaatacttgcttgagttaactcacgc 100  Q
    ||||||| |||||||||||||  |||||||||| ||| |||||||||||||||    
T  37919831 tgcaaaaacattgtgaatatgcaaaaacaatacatgcgtgagttaactcacgc 37919779  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 48996713 - 48996670
Alignment:
Q  172 gctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||    
T  48996713 gctgcaggacgcgagcgaaaagtgctgggtgaagagcagcattc 48996670  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 3872171 - 3872137
Alignment:
Q  181 cgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||||||||||||| ||||||||||||||    
T  3872171 cgcgagcgaaaagtgcagggggaagagcagaattc 3872137  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 18169267 - 18169181
Alignment:
Q  130 acacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||| || |||||||||  ||||  ||||||||   |||||||||| |  |||||| ||| ||||||||||||||||||||||||    
T  18169267 acacttgcactagttaacttgcgcaagagtatttttggcatggctgcagggtgcgagcaaaatgtgcagggtgaagagcagaattct 18169181  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 30308338 - 30308265
Alignment:
Q  143 ttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||||| ||  |||||   |||||||||| | ||||||| ||| |||||||||||||||| |||||||    
T  30308338 ttaactaacgcaaaaacatttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagctgaattct 30308265  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 44528007 - 44528060
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgca 177  Q
    ||||||||||||  ||||||||||||||| || |||||||||  ||||||||||    
T  44528007 ttttttacacttgtattagttaactaacgtaggagtattttggacatggctgca 44528060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 11435209 - 11435249
Alignment:
Q  60 gtgaatatggcaaaacaatacttgcttgagttaactcacgc 100  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  11435209 gtgaatatggcaaaacaatacttacgtgagttaactgacgc 11435249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 48569427 - 48569475
Alignment:
Q  168 catggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||| ||| | ||||||| ||| ||||||||||||||||||||||||    
T  48569427 catggcagcagggcgcgagcaaaatgtgcagggtgaagagcagaattct 48569475  T

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Target: scaffold0276 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 3603 - 3705
Alignment:
Q  106 taaaaattaagtttcttatttt-ttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaa 204  Q
    |||||||||| ||||||||||| |||||||| | || |||||||||||||| ||||||||  ||||||||||| | ||||||||||||||| | ||||||    
T  3603 taaaaattaaatttcttatttttttacacttgcgttggttaactaacgcaggagtattttagtcatggctgcagggcgcgagcgaaaagtgaaaggtgaa 3702  T
Q  205 gag 207  Q
    |||    
T  3703 gag 3705  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 46273524 - 46273613
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||||||| | ||||||||||||||||   ||||||||| || | ||||||||||||||||||||||||||||  ||||||| ||||||    
T  46273524 tttacacttgcgttagttaactaacgcatgggtattttgaacaagactgcaagacgcgagcgaaaagtgcagggcaaagagcaaaattct 46273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 39476463 - 39476415
Alignment:
Q  168 catggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  39476463 catggctgcaaggcgcgagcaaaatgtgcagggtgaagagcagaattct 39476415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 47441639 - 47441554
Alignment:
Q  130 acacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||| | ||| |||||||||||||| | |||||   || |||| || ||||||||| ||||||||||||||||||||| |||||    
T  47441639 acacttgcgttacttaactaacgcagaggcatttttggcaaggctacaggacgcgagcaaaaagtgcagggtgaagagcataattc 47441554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 4034187 - 4034105
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagca 209  Q
    |||||||||||| |||||||||| || ||  ||||||||| ||||||||||||  ||||| ||||  |||  |||||||||||    
T  4034187 tttacacttacactagttaactagcgtaggggtattttgaacatggctgcaaggtgcgagggaaatctgctaggtgaagagca 4034105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 36653301 - 36653215
Alignment:
Q  126 ttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaa 212  Q
    |||||||||| | |||||||||||||||||  ||||||| |  ||||||| |   ||||||||||| ||||  ||||||||||||||    
T  36653301 ttttacacttgcgttagttaactaacgcaggcgtattttcaaaatggctgtagagcgcgagcgaaatgtgctaggtgaagagcagaa 36653215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 25868120 - 25868011
Alignment:
Q  106 taaaaattaagtttcttattttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaag 205  Q
    |||||| |||||  |||||||||||||||| | ||||||||||| || ||   ||||||| | ||||||||| | |||||||||||||||||||| ||||    
T  25868120 taaaaactaagtcccttattttttacacttgcgttagttaactagcgtagggttattttggtgatggctgcagggcgcgagcgaaaagtgcagggggaag 25868021  T
Q  206 agcagaattc 215  Q
    ||||| ||||    
T  25868020 agcaggattc 25868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 6408636 - 6408545
Alignment:
Q  124 ttttttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||| ||||| |||||||||||||||||  |||||||   ||||||||||   || |||||||||||| |||||||||||| ||||||    
T  6408636 ttttttacgcttacgttagttaactaacgcaggggtattttcgccatggctgcagagcgtgagcgaaaagtggagggtgaagagctgaattc 6408545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 43275561 - 43275515
Alignment:
Q  169 atggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| | |||||||||||||||||||| || |||||||||||    
T  43275561 atggctgcagggcgcgagcgaaaagtgcagggggatgagcagaattc 43275515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 21102298 - 21102375
Alignment:
Q  139 ttagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    ||||||||||||||||   ||||||||  || |||| || | |||||||||||||||||||  |||||||| ||||||    
T  21102298 ttagttaactaacgcatgggtattttgggcaaggctacagggcgcgagcgaaaagtgcaggtggaagagcaaaattct 21102375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 1080940 - 1080864
Alignment:
Q  140 tagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||| |||||| |||||||   ||||||| ||||  |||||||||| || | | |||||||||||||||||    
T  1080940 tagttaactagcgcagaggtattttagacatggctacaaggtgcgagcgaaatgtactgagtgaagagcagaattct 1080864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 7634106 - 7634154
Alignment:
Q  168 catggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattct 216  Q
    |||||||||| | |||||| |||||| ||||||||||||||| ||||||    
T  7634106 catggctgcagggcgcgagtgaaaagagcagggtgaagagcataattct 7634154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 34954921 - 34955009
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| |  |||||||||| |||||  | |||||   ||||||||||||  |||||||||| |||  ||||||||||||||||||    
T  34954921 tttacacttgcggtagttaactagcgcaggggcattttaggcatggctgcaaggtgcgagcgaaatgtgatgggtgaagagcagaattc 34955009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 21103 - 21178
Alignment:
Q  140 tagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    |||||||||||||||   | ||||||   ||||||||| || |||||||||| |||| ||||||||||||||||||    
T  21103 tagttaactaacgcatgggcattttggatatggctgcaggatgcgagcgaaatgtgctgggtgaagagcagaattc 21178  T

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Target: scaffold0408 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 7911 - 8001
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattctc 217  Q
    ||||||||| | ||||||||||| | || | ||||||||  || || || | | |||||||||||||||||||| |||||||| |||||||    
T  7911 tttacacttgcgttagttaactatcacataggtattttgggcaaggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattctc 8001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 256479 - 256391
Alignment:
Q  127 tttacacttacattagttaactaacgcagaagtattttgatcatggctgcaagacgcgagcgaaaagtgcagggtgaagagcagaattc 215  Q
    ||||||||| | ||||||||||||||||   ||||||||  || | ||||| | |  |||| ||| |||||||||||||||||||||||    
T  256479 tttacacttgcgttagttaactaacgcatgggtattttgggcacgcctgcagggcctgagcaaaatgtgcagggtgaagagcagaattc 256391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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