View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_6 (Length: 491)
Name: NF8199_low_6
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 105 - 491
Target Start/End: Complemental strand, 44134643 - 44134260
Alignment:
| Q |
105 |
tacatttttagttgcagtgaaaattagaatgtcgacattctcaaaaaatttgtgacagcacgtgctttatcagccttggaaatacagaaacaagataagt |
204 |
Q |
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| T |
44134643 |
tacatttttagttgcagtgaaaa---gaatgtcgacattctcaaaaaatttgtgacagcacgtgctttatcagccttggaaatacagaaacaagataagt |
44134547 |
T |
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| Q |
205 |
aacaattattacatctcaacaatagaaaggtgagagatcaagcaagagagttactgcaggcaatattttggctctagccttgagaacagtcttcaactct |
304 |
Q |
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| T |
44134546 |
aacaattattacatctcaacaatagaaaggtgagagatcaagcaagagagttactgcaggcaatattttggctctagccttgagaacaatcttcaactct |
44134447 |
T |
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| Q |
305 |
atacgaacctgcataaacttgactcattatccttcagcattctcgaaaaagtgttcaagcctgaccaatctcttcaattcttcttcaagccgaaccatct |
404 |
Q |
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| T |
44134446 |
atacgaacctgcataaacttgactcattatccttcagcattctcgaaaaagtgttcaagcctgaccaatctcttcaattcttcttcaagccgaaccatct |
44134347 |
T |
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| Q |
405 |
tcggtgacatcgcttacggtggcttctgttatgcatgtttaggaccgtctgcaacattaggggtagagtgttgaattgtttcgaaga |
491 |
Q |
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| T |
44134346 |
ttggtgacatcgcttacggtggcttctgttatgcatgtttaggaccgtttgcaacattaggggtagagtgttgaattgttttgaaga |
44134260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 268 - 389
Target Start/End: Complemental strand, 44142954 - 44142830
Alignment:
| Q |
268 |
tattttggctctagccttgagaacagtcttcaactctatacgaacctgcataaacttgactc-attatccttca--gcattctcgaaaaagtgttcaagc |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | ||||||||||| || ||||| ||||||||||||||| |
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| T |
44142954 |
tattttggctctagccttgagaacagtcttcaactctatgcgaacctgcataaacttggccctattatccttcagcgcgttctcaaaaaagtgttcaagc |
44142855 |
T |
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| Q |
365 |
ctgaccaatctcttcaattcttctt |
389 |
Q |
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| T |
44142854 |
ctgaccaatctctctaattcttctt |
44142830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 44142771 - 44142694
Alignment:
| Q |
414 |
tcgcttacggtggcttctgttatgcatgtttaggaccgtctgcaacattaggggtagagtgttgaattgtttcgaaga |
491 |
Q |
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| T |
44142771 |
tcgcttacagtggcttctgttatgcatgttgcagaccgttggcaacattaggggtagagtattgaattgttttgaaga |
44142694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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