View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_60 (Length: 240)
Name: NF8199_low_60
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 34042484 - 34042267
Alignment:
| Q |
4 |
ttttagatatgaagaataggtttgatatagacaaacatgcatgattaacggagacataatgttcaatgctatattataccatgcattcnnnnnnnnaaaa |
103 |
Q |
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| T |
34042484 |
ttttagatatgaagaataggtttgata--gacaaacatgcatgattaacggagacataatgttcaatgctatattataccatgcattcttttttaaaaaa |
34042387 |
T |
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| Q |
104 |
caatattatacctaagaaaggttaacacttaatatacacgggggttcaatatttaatcaagcaacaattaatatatgataatgaactttgaaaatgagaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34042386 |
caatattatacctaagaaaggttaacacttaatatacacgggggttcaatatttaatcaagcaacagttaatatatgataatgaactttgaaaatgagaa |
34042287 |
T |
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| Q |
204 |
gagaaagacttagagaactc |
223 |
Q |
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|||||||||||||||||||| |
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| T |
34042286 |
gagaaagacttagagaactc |
34042267 |
T |
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