View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_7 (Length: 481)
Name: NF8199_low_7
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 258 - 463
Target Start/End: Original strand, 38636678 - 38636883
Alignment:
| Q |
258 |
ctctgggttggttttgttcggttggagcaatgacagctctagaagccatagcagaaatactatcagattcttgaagattagatccaaaaacaccaccaag |
357 |
Q |
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| T |
38636678 |
ctctgggttggttttgttcggttggagcaatgacagctctagaagccatagcagaaatattatcagattcttgaagattagatccaaaaacaccaccaag |
38636777 |
T |
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| Q |
358 |
actagagaagatcgacgaaagaaacacgtgaattcgactgttcctcgtctcaccttctcctccttcccctcctcctctttcttcgtctgtagtcgccacc |
457 |
Q |
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| T |
38636778 |
actagagaagatcgacgaaagaaacacgtgaattctactgttcctcgtctcaccttctcctccttcccctcctcctctttcttcgtctgtagtcgccacc |
38636877 |
T |
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| Q |
458 |
ctcaac |
463 |
Q |
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|||||| |
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| T |
38636878 |
ctcaac |
38636883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 38636441 - 38636640
Alignment:
| Q |
1 |
atatcataaacaaacaatcactgaaagattcaaactatagaaaacaataaaggttgtaacacatttaaactgtgaacagataatcacagaaagattcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38636441 |
atatcataaacaaacaatcactgaaagattcaaactttagaaaacaataaaggt---aacacatttaaactgtgaacagataatcacagaaagattcaaa |
38636537 |
T |
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| Q |
101 |
ttttagtaaataaaaaatcaacatgttcaagagaattaatcaatcacataaaccctgataaccaaaagtactaaatcacccttaatcttcaatttttcag |
200 |
Q |
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| T |
38636538 |
ttttagtaaataaaaaatcaacatgttcaagagaattaatcaatcacataaaccctgataagcaaaagtactaaatcacccttaatcttcaatttttcag |
38636637 |
T |
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