View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_8 (Length: 471)
Name: NF8199_low_8
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 22 - 461
Target Start/End: Complemental strand, 46129545 - 46129100
Alignment:
| Q |
22 |
cgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacttgctaaagaac |
121 |
Q |
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| T |
46129545 |
cgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacatgctaaagaac |
46129446 |
T |
|
| Q |
122 |
attaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccnnnnnnn-caacagaattctgttaaagcctcttatattggcaattggt |
220 |
Q |
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| T |
46129445 |
attaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccttttttttcaacagaattctgttaaagcctcttatattggcaattggt |
46129346 |
T |
|
| Q |
221 |
accgctccttaatcatggctatgctcttgatatggaacaa----ctatcatagttaccctaaattctaaaacatgaaagtattaattacaattttgaatt |
316 |
Q |
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| T |
46129345 |
accgctccttaatcatggctatgctcttgatatggaacaattatatatcatagttaccctaaattctaaaacatgaaagtattaattacaattttgaatt |
46129246 |
T |
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| Q |
317 |
ttccaacaatacaacaaatttttggtatcttaacatcatagaataattagttcttctactctatccttctaaca-ttaagtgtcaagtttagcatatttc |
415 |
Q |
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| T |
46129245 |
ttccaacaatacaacaaatttttggtatcttaacatcatggaataattagttcttctactctatccttctaacatttaagtgtcaagtttagcatatttc |
46129146 |
T |
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| Q |
416 |
gttagagtcatattattaaccattttcaattactaatggagtatta |
461 |
Q |
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| T |
46129145 |
gttagagtcatattattaaccattttcaattactaatggagtatta |
46129100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 114 - 468
Target Start/End: Complemental strand, 46702267 - 46701912
Alignment:
| Q |
114 |
taaagaacattaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccnnnnnnn-------caacagaattctgttaaagcctctta |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||| |||||||||||| |
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| T |
46702267 |
taaacaacattaagggtcgtccgacatgcattatatgtagctctaactctaaaatggactttttttttctctctcaatagaattctgataaagcctctta |
46702168 |
T |
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| Q |
207 |
tattggcaattggtaccgctccttaatcatggctatgctcttgatatggaacaactatcatagttaccctaaattctaaaacatgaaagtattaattaca |
306 |
Q |
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| T |
46702167 |
tattggcaattggtatcgctccttaatcatggctatgctcttgatatggaacaattatcatagttaccctaaattctaaaacatgaaagtattaattaca |
46702068 |
T |
|
| Q |
307 |
attttgaattttccaacaatacaacaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtt |
404 |
Q |
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| T |
46702067 |
atttt-------ccaacaatacaacaaatttttggtatcttaacatatcatagaataattagttcttctaatctatccttctaacattaagtgtcaagtt |
46701975 |
T |
|
| Q |
405 |
tagcatatttcgttagagtcatattattaaccattttcaattactaatggagtattatctaccc |
468 |
Q |
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| T |
46701974 |
tggcatatttcgttagagtcatattattaaccattttc-attactaatggagtattatttaccc |
46701912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 46702330 - 46702243
Alignment:
| Q |
22 |
cgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgac |
109 |
Q |
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|||||||||||||| ||| |||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||| || |||||| |
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| T |
46702330 |
cgtccgacagtaagccctgtttcattgcaggaatggtttgcgcctgttaaacaccattaagagtaaacaacattaagggtcgtccgac |
46702243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 461
Target Start/End: Complemental strand, 46123256 - 46123110
Alignment:
| Q |
314 |
attttccaacaatacaacaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtttagcata |
411 |
Q |
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||||||||| |||||| ||| |||||||||||||||||| |||||| || ||||||||| ||||| ||| ||| |||| | | |||||||||| ||| |
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| T |
46123256 |
attttccaataataca-caagtttttggtatcttaacatatcatagactagttagttcttttactccctccatct--catttaatttcaagtttagaata |
46123160 |
T |
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| Q |
412 |
tttcgttagagtcatattattaaccattttcaattactaatggagtatta |
461 |
Q |
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|||||| | |||||||||| ||||||| |||||||||||||| |||| |
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| T |
46123159 |
attcgtttgtgtcatattatctgccattttaaattactaatggagcatta |
46123110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 46123395 - 46123358
Alignment:
| Q |
136 |
gacatgcattatatgtagctctagctctaacatggacc |
173 |
Q |
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| T |
46123395 |
gacatgcattatatgtagctctaggtctaaaatggacc |
46123358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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