View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_low_9 (Length: 463)
Name: NF8199_low_9
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 41745191 - 41745620
Alignment:
| Q |
18 |
aaaaaacaaaatattttgaaacacttgtcttcgattgtgtgacacatcagacaccaatttaagaagtgttgaaacaaagannnnnnnnnnnaaggatttg |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
41745191 |
aaaaaataaaatattttgaaacacttgtcttcgattgtgtgacgcgtcagacaccaatttaagaagtgttgaaacaaagaatttttttttaaag-atttg |
41745289 |
T |
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| Q |
118 |
tatgagatatttaaccacgttgtgagagtgtcatactaaatataagacatcgcgacacatctaattctagagttgt-cgtgtttcatagctaatgacaca |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |
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| T |
41745290 |
tatgagatatttaaccacgttgtgagagtatcatactaaatataggacatcgcgacacatctaattcaagagttttacgtgtttcatagctaatgacaca |
41745389 |
T |
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| Q |
217 |
taatagacaactatatattatgtttctaattatcattcgcggcgggttatggaccaaaaacttagtctaaggtacaaataaaaatgagtaatgttatttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745390 |
taatagacaactatatattatgtttctaattatcattcccggcgggttatggaccaaaaacttagtctaaggtacaaataaaaatgagtaatgttatttt |
41745489 |
T |
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| Q |
317 |
tcatgtacttgaaaatgtggggcagagtagtcaaacaacatagaatataccttaaggttgtcgatgagtaacatcaaactcctcaattttctgtgaggcc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745490 |
tcatgtacttgaaaatgtggggcagagtagtcaaacaacatagaatataccttaaggttgtcgatgagtaacatcaaactcctcaattttctgtgaggcc |
41745589 |
T |
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| Q |
417 |
acctggtgatgttgagctccctgcatctttt |
447 |
Q |
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| T |
41745590 |
acctagtgatgttgagctccctgcatctttt |
41745620 |
T |
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Back To:
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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 29589927 - 29589845
Alignment:
| Q |
366 |
ccttaaggttgtcgatgagtaacatcaaactcctcaattttctgtgaggccacctggtgatgttgagctccctgcatcttttt |
448 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
29589927 |
ccttaaggttctcgatgagtaacatcaaactcctcaattttctgtgagaccacctagtgatgttgagctccctgcatcttttt |
29589845 |
T |
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