View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_high_19 (Length: 279)
Name: NF8200_high_19
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 41286703 - 41286453
Alignment:
| Q |
19 |
acaccattctgatactcaagggatatcaatggttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgcc |
118 |
Q |
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| T |
41286703 |
acaccattctgacacaccagggatatcactggttaaccaacctctgaatggaggtaactacggcgaatggagtcgatcaatgctcctcagcctcagcgcc |
41286604 |
T |
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| Q |
119 |
aaaaacaaactcggtctgatccatggaacagtgaaagcgtggtcggctgatgacccaaaactcccattatgtaaacgttgcaatgatctggtgttaacat |
218 |
Q |
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||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||| |
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| T |
41286603 |
aaaaacaaactcggtctgatcgatggaacggtgaaagcgccgtcggctgacgacccaaaactcccattgtggaaacgttgcaatgatctggtgctaacat |
41286504 |
T |
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| Q |
219 |
ggatccttcattccatcgaacccgagatagctcgtagtgtaatattctctg |
269 |
Q |
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| T |
41286503 |
ggatccttcattccatcgaacccgacatagctcgtagtgtaatcttctctg |
41286453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 19524131 - 19523985
Alignment:
| Q |
19 |
acaccattctgatactcaagggatatcaatggttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgcc |
118 |
Q |
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|||||||| ||| || |||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||| |
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| T |
19524131 |
acaccattatgacacacaagggatatcattggttaaccaacctctgaatggacgtaactacggctaatggagtcgcttaatgctcctcagtcttagcgcc |
19524032 |
T |
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| Q |
119 |
aaaaacaaactcggtctgatccatggaacagtgaaagcgtggtcggc |
165 |
Q |
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| T |
19524031 |
aaaaacaaactcggtctgatcgatggaacagtgaaagcgtcgtcggc |
19523985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 19523986 - 19523915
Alignment:
| Q |
198 |
gcaatgatctggtgttaacatggatccttcattccatcgaacccgagatagctcgtagtgtaatattctctg |
269 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19523986 |
gcaaggatctggtgttaacatggattcttcattccatcgaacccgacatagctcgtagtgtaatattctctg |
19523915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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