View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8200_high_24 (Length: 252)
Name: NF8200_high_24
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 37627559 - 37627724
Alignment:
| Q |
16 |
tgtggttgaatttggtcaaatcttcaagaggaaaaaacagccatctagtgggtccatgccaagtgtttatgacaattcaacaaaggaacccaaaataaac |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37627559 |
tgtggttgaatttggtcaaatattcaagaggaaaaaacagccatctagtgggtccatgccaagtgtttatgacaattcaacaaatgaacccaaaataaac |
37627658 |
T |
|
| Q |
116 |
acaagctctgatttagactaataaatctaagaaaattaagttgaacaaatcagattattaaaatat |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37627659 |
acaagctctgatttagactaataaatctaagaaaattaagttgaacaaatcagattattaaaatat |
37627724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 37628489 - 37628552
Alignment:
| Q |
173 |
ttaaaatatattcaattagatttaaaataagattttgttggtctataaataccaccttataaag |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37628489 |
ttaaaatatattcaattagatttaaaataagattttgttggtctataaataccaccttataaag |
37628552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University