View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_high_3 (Length: 502)
Name: NF8200_high_3
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Complemental strand, 9518279 - 9517801
Alignment:
| Q |
8 |
tgagatgaaggagtggtgggaggctctgttcttcaaggtgaataaatggtatcctcatatggtggccaagaagcgaagagtttgggtgcaactatgggga |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9518279 |
tgagaggaaggagtggtgggaggctctgttcttcaaggtgaatacatggtatcctcatatggtggccaagaagagaagagtttgggtgcaactatgggga |
9518180 |
T |
|
| Q |
108 |
atacctcttgtaacaacctaacaaatcttatccaaaacaaactaaacactcttaatctctactaatcatgattatggattaaaacacaaactaataaaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9518179 |
gtacctcttgtaacaacctaacaaatcttatccaaaacaaactaaacactcttaatctctactaatcatgattatggattaaaacacaaactaataaaag |
9518080 |
T |
|
| Q |
208 |
taacttcaaaagaagctttaaggattac-----aaataaata--aataagttgtacaatttgatgtgaagctactatggaaacaattgaagccattttca |
300 |
Q |
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|||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9518079 |
taacttcaaaagaagctttaaggattacaaaaaaaagaaataataataagttgtacgatttgatgtgaagctactatggaaacaattgaagccattttca |
9517980 |
T |
|
| Q |
301 |
actttgttattcattattctactttagtactcgaatccgaaatccataacataaccaacnnnnnnntaataataaataagaagttcaactagcagcatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || | |||||||||||| |||||||||||| |
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| T |
9517979 |
actttgttattcattattctactttagtactcgaatccaaaatccataacataaccaacaaa-----aaaaaaacataagaagttcatctagcagcatct |
9517885 |
T |
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| Q |
401 |
ttgtcacatcgatcatacatcattcttcttcattaggaggcaactcgttcaagtcgaatcctaaacctttgccttcatcggact |
484 |
Q |
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| T |
9517884 |
ttgtcgcatcgatcatatatcattcttcttcattaggaggcaactcgttcaagtcgaatcctaaacctttgccttcatcagact |
9517801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 204 - 484
Target Start/End: Complemental strand, 9526928 - 9526640
Alignment:
| Q |
204 |
aaagtaacttcaaaagaagctttaaggattacaaataaataaataagttgtacaatttgatgtgaagctactatggaaacaattgaagccattttcaact |
303 |
Q |
| |
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|||||||||||| ||||||||||| |||||||| | | | || | ||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
9526928 |
aaagtaacttcataagaagctttacggattacataaacaaaagtt-gttgtacgatttaatgtgaagctggtatggaaacaattgaagccattttcaact |
9526830 |
T |
|
| Q |
304 |
ttgttattcattattctactttagtactcgaatccgaaatccataacataaccaacnnnnnnntaataataaa---------taagaagttcaactagca |
394 |
Q |
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| T |
9526829 |
ttgttattcattattctactttagtactcaaatccaaaacccataaaataaccaacaaaaccaaaaacaaaaacaaaaaacataagaagttgaactagca |
9526730 |
T |
|
| Q |
395 |
gcatctttgtcacatcgatcatacatcattcttcttcattaggaggcaactcgttcaagtcgaatcctaaacctttgccttcatcggact |
484 |
Q |
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| T |
9526729 |
gcatattcgtcacatcgatcatacatcactcttcttcattaggaggcaactcgttcaagtcgaatcctaaaccttttccttcatcagact |
9526640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 307 - 484
Target Start/End: Original strand, 9513473 - 9513654
Alignment:
| Q |
307 |
ttattcattattctactttagtactcgaatccgaaatccataacataaccaacnnnnnnntaata-----ataaataagaagttcaactagcagcatctt |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |||||| || || | | |||||||||||| |||||||||||| || |
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| T |
9513473 |
ttattcattattctactttagtactcgaatccgaaacccataaaataacccacaaatccaaaaaataaataaaaataagaagttgaactagcagcatatt |
9513572 |
T |
|
| Q |
402 |
tgtcacatcgatcatacatcattcttcttcattaggaggcaactcgttcaagtcgaatcctaaacctttgccttcatcggact |
484 |
Q |
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| T |
9513573 |
tgtcacattgatgatacatcattcttgttcattatgaggcaactcgttcaagtcg-atcctaaacctttgccttcatcagact |
9513654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 5247200 - 5247110
Alignment:
| Q |
112 |
ctcttgtaacaacctaacaaatcttatccaaaacaaactaaacactcttaatctctactaatcatgattatggattaaaacacaaactaata |
203 |
Q |
| |
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| T |
5247200 |
ctcttgtaacaacctaacaaa-cttatccaaaacaaactaaacactcttaatctctactaatcatgactattgattaaaacacaaactaata |
5247110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 3952614 - 3952706
Alignment:
| Q |
112 |
ctcttgtaacaacctaacaaatcttatccaaaaca--aactaaacactcttaatctcta-ctaatcatgattatggatt-aaaacacaaactaata |
203 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| | |||||||| |||||||| || |||| |||||||||||||| |||||||||||||||| |
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| T |
3952614 |
ctcttgtaacaacctgacaaa-cttatccaaaaaataaactaaac--tcttaatcacttgctaaacatgattatggattaaaaacacaaactaata |
3952706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 17372057 - 17372148
Alignment:
| Q |
112 |
ctcttgtaacaacctaacaaatcttatccaaaac--aaactaaacactcttaatctcta-ctaatcatgattatggattaaaacacaaactaataa |
204 |
Q |
| |
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|||||||||||| |||||||| ||||||||||| ||||||||| |||||||| || |||| |||||||||||||| |||||||||||||||| |
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| T |
17372057 |
ctcttgtaacaatctaacaaa-cttatccaaaaactaaactaaac--tcttaatcactttctaaacatgattatggatt-aaacacaaactaataa |
17372148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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