View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8200_high_30 (Length: 243)
Name: NF8200_high_30
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_high_30 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 51847089 - 51846981
Alignment:
| Q |
135 |
tgggttcaaacttttcagcaattaattttgaggtatttgtcacaaaaatgggttcattatattatgaattgcacattaatttacaagggccataaacagc |
234 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51847089 |
tgggttcaaacttttcatcaattaattttgaggtatttgtcacaaaaatgggttcattatattatgaattgcacattaatttacaagggccataaacagc |
51846990 |
T |
|
| Q |
235 |
acaagaggc |
243 |
Q |
| |
|
||||||||| |
|
|
| T |
51846989 |
acaagaggc |
51846981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 51847193 - 51847141
Alignment:
| Q |
31 |
cacatgaatggcattaggcatttctttgtagaatagatcgcattggctaactt |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51847193 |
cacatgaatggcattaggcatttctttgtagaatagatcgcattggctaactt |
51847141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University