View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_high_31 (Length: 241)
Name: NF8200_high_31
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7543436 - 7543659
Alignment:
| Q |
1 |
caacaggaggacaaccagcattgaatgtggttgaaagtatgtgtgtaatggggcaagtcaggattactgcttcagattttcatcatactggtgaaaccat |
100 |
Q |
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| T |
7543436 |
caacaggaggacaaccagcattgaatgtggttgaaagtatgtgtgtaatggggcaagtcaggattactgcttcagattttcatcatactggtgaaaccat |
7543535 |
T |
|
| Q |
101 |
tgaagtgnnnnnnncctctgaagagagtggaggatttgttttatggcaaaaggatccagatttgtggtgtttagaactcattgtgtctggttgcaaggtt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7543536 |
tgaagtgaaaaaaacctctgaagagagtggaggatttgttttatggcaaaaggatccagatttgtggtgtttagaactcattgtgtctggttgcaaggtt |
7543635 |
T |
|
| Q |
201 |
agttgtggtagcaatggtaaggtt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7543636 |
agttgtggtagcaatggtaaggtt |
7543659 |
T |
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