View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_high_5 (Length: 460)
Name: NF8200_high_5
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 30497908 - 30498348
Alignment:
| Q |
1 |
aagaaagtgatgttagagcagaacacatttttcttttccttcnnnnnnncactgcaacttatcttttcactactccaaatgagaaatttaatgtgtaatc |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30497908 |
aagaaagtgatgttagagcataacacatttttcttttccttcaaaaaaacactgcagcttatcttttcactactccaaatgagaaatttaatgtgtaatc |
30498007 |
T |
|
| Q |
101 |
tgagccattagattaaaagaaaatagtggacaaagatgtggagtaagtctttaaacttattatttgagtcaatatatctcttctaaaaataatattgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498008 |
tgagccattagattaaaagaaaatagtggacaaagatgtggagtaagtctttaaacttattatttgagtcaatatatctcttctaaaaataatattgtaa |
30498107 |
T |
|
| Q |
201 |
caaagattcctggttattgcatagtgatgaggatactgatcacgatagctagtttactcatttccttgttgtacaagtaacagatactagggttctatac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498108 |
caaagattcctggttattgcatagtgatgaggatactaatcacaatagctagtttactcatttccttgttgtacaagtaacagatactagggttctatac |
30498207 |
T |
|
| Q |
301 |
gctactgcatgcatagtttaggttatcatgcactgagatccttgtatatatacacattgtaatcattcaatcatcaatgagaattcatatttcttcactc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30498208 |
gctactgcatgcatagtttaggttatcatgcactgagatccttgtatatatacacattgtaatcattcaatcatcaatgagaattcacatttcttcactc |
30498307 |
T |
|
| Q |
401 |
tttcttgttttctaatatggtatcacgcgccttctcccacg |
441 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
30498308 |
tttcttgtttcctaatatggtatcacgcgccttctcccacg |
30498348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 30505819 - 30506023
Alignment:
| Q |
7 |
gtgatgttagagcagaacacatttttcttttccttcnnnnnnncactgcaacttatcttttcactactccaaatgagaaatttaatgtgtaatctgagcc |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| | |||||||||||||||||||| || |
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|
| T |
30505819 |
gtgatgttagagcataacacatttttcttttccttcgaaaaaacactggaacttatcttttcgctactccaaattaaaaatttaatgtgtaatctgaacc |
30505918 |
T |
|
| Q |
107 |
attagattaaaagaaaatagtggacaaagatgtggagtaagtctttaaacttattatttgagtcaatatatctcttctaaaaataatattgtaacaaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30505919 |
gttagattaaaagaaaatagtggacgaagatgtggtgtaagtctttaaacttataatttgagtcaatatatatcttctaaaaataatattgtaacaaaga |
30506018 |
T |
|
| Q |
207 |
ttcct |
211 |
Q |
| |
|
||||| |
|
|
| T |
30506019 |
ttcct |
30506023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 245 - 417
Target Start/End: Original strand, 27982850 - 27983022
Alignment:
| Q |
245 |
atagctagtttactcatttccttgttgtacaagtaacagatactagggttctatacgctactgcatgcatagtttaggttatcatgcactgagatccttg |
344 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||| ||||||||| ||||| ||||||| |||| |
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|
| T |
27982850 |
atagttagtttactcatttccttgttgtacaagtaacagatactagggttttatattttactgaatgtatattttaggttaccatgccctgagattcttg |
27982949 |
T |
|
| Q |
345 |
tatatatacacattgtaatcattcaatcatcaatgagaattcatatttcttcactctttcttgttttctaata |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||| |||||| |
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|
| T |
27982950 |
tatatatacacattgtaatcattctatcatcaatgagaattcacatttattcattctttcttgtttcctaata |
27983022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 417
Target Start/End: Original strand, 10202964 - 10203109
Alignment:
| Q |
272 |
tacaagtaacagatactagggttctatacgctactgcatgcatagtttaggttatcatgcactgagatccttgtatatatacacattgtaatcattcaat |
371 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| |||||||| | | ||||||| ||||||| ||| ||||||||||||| |||||||||||||| || |
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|
| T |
10202964 |
tacaagtaacattcactagggttttatattctattgcatgcacactctaggttactatgcactctgattcttgtatatatactcattgtaatcattctat |
10203063 |
T |
|
| Q |
372 |
catcaatgagaattcatatttcttcactctttcttgttttctaata |
417 |
Q |
| |
|
||||||| | |||||| ||| |||| | | |||||||| |||||| |
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|
| T |
10203064 |
catcaataacaattcacttttattcattttctcttgtttcctaata |
10203109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 439
Target Start/End: Original strand, 928400 - 928519
Alignment:
| Q |
319 |
taggttatcatgcactgagatccttgtatatatacacattgtaatcattcaatcatcaatgagaattcatatttcttcactctttcttgttttctaatat |
418 |
Q |
| |
|
|||||||| ||||||| ||| | ||||||||||| | |||||||||||||||||||||| | |||||| ||| | | | | |||||||| |||||| |
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|
| T |
928400 |
taggttatgatgcactctgattcatgtatatataccc-ttgtaatcattcaatcatcaataacaattcacttttacttattttatcttgtttcataatat |
928498 |
T |
|
| Q |
419 |
ggtatcacgcgccttctccca |
439 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
928499 |
ggtatcacgcgccttctccca |
928519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 42995338 - 42995380
Alignment:
| Q |
135 |
gatgtggagtaagtctttaaacttattatttgagtcaatatat |
177 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||||||||| |
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|
| T |
42995338 |
gatgtggagtaactctttaaacttactattggagtcaatatat |
42995380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 21435448 - 21435406
Alignment:
| Q |
135 |
gatgtggagtaagtctttaaacttattatttgagtcaatatat |
177 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||||||||| |
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|
| T |
21435448 |
gatgtggagtaactctttaaacttattcttagagtcaatatat |
21435406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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