View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8200_high_6 (Length: 385)
Name: NF8200_high_6
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 113097 - 113442
Alignment:
| Q |
16 |
atgaagcattttgaattagtgggtggatttggaattctaaagcagcacttaaggatggggtttactgcaaaagttagtgtggaaaaagtacaaagcagta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
113097 |
atgaagcattttgaattagtgggtggatttggaattctaaagcagcacttaaggatggggtttactgcaaaagttagtgtagaaaaagtacaaagcagta |
113196 |
T |
|
| Q |
116 |
atatgccattacaagtagccattacacgtcccattttggaaggtgttcccaaagtaatcctttcaggttgtcgattaacatgatcttgaatattcaagaa |
215 |
Q |
| |
|
| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
113197 |
aaatgccatgacaagtagccattacaagtcccattttggaaggtgttcccaaagtaatcctttcaggttgtcaattaacatgatcttgaatattcaagaa |
113296 |
T |
|
| Q |
216 |
ataagaatttgttgttgagttggtcttgaaaacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtac |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113297 |
ataagaatttgtcgttgagttggtcttgaaaacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtac |
113396 |
T |
|
| Q |
316 |
cttgcagagttaagcagacacttaaaaggaagcaaagtaaggatag |
361 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
113397 |
cttgcagagttaagaagacacttaaaaggaagcaaagtaaggatag |
113442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 27360554 - 27360505
Alignment:
| Q |
44 |
ttggaattctaaagcagcacttaaggatggggtttactgcaaaagttagt |
93 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
27360554 |
ttggaattttaaagcaggacttaaggatagggtttactgcaaaagttagt |
27360505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 27360367 - 27360267
Alignment:
| Q |
246 |
aacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtaccttgcagagttaagcagacacttaaaagga |
345 |
Q |
| |
|
|||||| ||||| ||||||||||| | ||| ||| || |||||||| | |||| ||||||||||||||||||||||||||| | ||| |||| |||| |
|
|
| T |
27360367 |
aacgtagagaccgggtggtttaagttgaaggcaggatggaatagcagtagaccaatgtttggagacgtaccttgcagagttaagtaaacagttaagagga |
27360268 |
T |
|
| Q |
346 |
a |
346 |
Q |
| |
|
| |
|
|
| T |
27360267 |
a |
27360267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 27369725 - 27369625
Alignment:
| Q |
246 |
aacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtaccttgcagagttaagcagacacttaaaagga |
345 |
Q |
| |
|
|||||| ||||| ||||||||||| | ||| ||| || |||||||| | |||| ||||||||||||||||||||||||||| | ||| |||| |||| |
|
|
| T |
27369725 |
aacgtagagaccgggtggtttaagttgaaggcaggatggaatagcagtagaccaatgtttggagacgtaccttgcagagttaagtaaacagttaagagga |
27369626 |
T |
|
| Q |
346 |
a |
346 |
Q |
| |
|
| |
|
|
| T |
27369625 |
a |
27369625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 4145196 - 4145122
Alignment:
| Q |
286 |
atagcagtggcccaagatttggagacgtaccttgcagagttaagcagacacttaaaaggaagcaaagtaaggata |
360 |
Q |
| |
|
|||| ||| |||||||||||| | || ||||||||||||||||||||||| |||| ||| || ||| |||||||| |
|
|
| T |
4145196 |
atagtagtagcccaagatttgcaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggata |
4145122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University