View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8200_high_7 (Length: 376)

Name: NF8200_high_7
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8200_high_7
NF8200_high_7
[»] chr1 (11 HSPs)
chr1 (11-361)||(9229089-9229439)
chr1 (11-319)||(9161337-9161645)
chr1 (13-307)||(9118809-9119103)
chr1 (16-319)||(9170163-9170466)
chr1 (16-319)||(9218246-9218549)
chr1 (13-319)||(9199730-9200036)
chr1 (13-319)||(9155425-9155731)
chr1 (13-319)||(1815515-1815821)
chr1 (16-319)||(1843215-1843518)
chr1 (16-319)||(1868824-1869127)
chr1 (16-319)||(1857226-1857529)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 9229439 - 9229089
Alignment:
Q  11 cagagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagcct 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9229439 cagagaaaagtgatgtttatagcttcggggtagtactggcagagctcctaacgggggagaaacctatttcttttaatagaccagaagaaaacagaagcct 9229340  T
Q  111 tgcaattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9229339 tgcaattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagtt 9229240  T
Q  211 gctattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagc 310  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9229239 gctattcttgctgcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagaggggttaaggttaatggagaagc 9229140  T
Q  311 acccttggacaaaatcagagataaatctcgatgaaactcaatccttgcttc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9229139 acccttggacaaaatcagagataaatctcgatgaaactcaatccttgcttc 9229089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 9161645 - 9161337
Alignment:
Q  11 cagagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagcct 110  Q
    ||||||||||||||||||||||||| || ||||| || |||||| | || ||||| || |||||| ||||||||||||| ||||||||||| |  || ||    
T  9161645 cagagaaaagtgatgtttatagctttggtgtagttcttgcagagcttcttacgggagacaaacctctttcttttaataggccagaagagaatatcagtct 9161546  T
Q  111 tgcaattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagtt 210  Q
    ||| || ||||| || |||||||||| | |  ||    | | ||||| | |||||||||||||||| |||||||| |||||||||||||||||||| |||    
T  9161545 tgctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaaggaggtt 9161446  T
Q  211 gctattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagc 310  Q
    |||||||||||||||||||| |||||||| | ||| || ||||| ||||||||||| |||||||| |||||| | || ||  |||||||||||||||| |    
T  9161445 gctattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaaggaagtggcaatggagttggatggtataaggttaatggagaacc 9161346  T
Q  311 acccttgga 319  Q
    | |||||||    
T  9161345 atccttgga 9161337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 9118809 - 9119103
Alignment:
Q  13 gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg 112  Q
    ||||||||||||||||||||||| || ||||| || |||||| | ||||| || || |||||| ||  |||||| || |||||||||| ||  || ||||    
T  9118809 gagaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctcttgattttaacaggccagaagagaccattagtcttg 9118908  T
Q  113 caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc 212  Q
    | || |||||||| |||||||||| | |  || |  | | ||||| | |||||||||| |||||||||||||| |||||||| ||||||||||| |||||    
T  9118909 ctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaaggaggttgc 9119008  T
Q  213 tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggaga 307  Q
    |||||||||||||||||| |||||||||  ||| |||||||||||||| ||||| ||| | ||||||||| | || ||  ||||||||| |||||    
T  9119009 tattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaaggaaatagctatggagttggatggtataaggttaaaggaga 9119103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 9170466 - 9170163
Alignment:
Q  16 aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa 115  Q
    |||||||||||||||||||| || ||||| || |||||| | ||||| || || |||||| ||||||||||||| |||||||||| ||  || ||||| |    
T  9170466 aaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaagagaccattagtcttgcta 9170367  T
Q  116 ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat 215  Q
    | ||||| || |||||||||| | |  || |  | | ||||| | ||||||||||  || |||| ||||| |||||| | ||||||||||| ||||||||    
T  9170366 tgcactttttgtcttgtttaaaacaagataaattttttgaagctattcaagttggatttgtgaacgatgataacaagaaagagattaaggaggttgctat 9170267  T
Q  216 tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcaccct 315  Q
    ||||||  ||||||| || ||||||| ||| || ||||||||| | ||||| |||||||| |||||| | || ||| ||||||||||||||||||| |||    
T  9170266 tcttgcttcaaggtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggcaatggagttggatggcataaggttaatggagaagcatcct 9170167  T
Q  316 tgga 319  Q
    ||||    
T  9170166 tgga 9170163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 9218549 - 9218246
Alignment:
Q  16 aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa 115  Q
    ||||||||||| |||||||| || ||||| || |||||| | ||||| || |  |||||| |||||||||| || |||||||||| ||  || ||||| |    
T  9218549 aaaagtgatgtgtatagctttggagtagttcttgcagagcttctaacaggtgccaaacctctttcttttaacaggccagaagagaccattagtcttgcta 9218450  T
Q  116 ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat 215  Q
    | ||||| || |||||||||| | |  || |  | | ||| | | |||||||||| ||||| |||||||| |||||| | ||||||||||| ||| ||||    
T  9218449 tgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttcaatgatgaaaacaagaaagagattaaggaggtttctat 9218350  T
Q  216 tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcaccct 315  Q
    |||||| |||||||| || ||||||| ||| || ||||||||||| ||||  ||||| ||||||||| | || ||| ||||||||||||||||||| |||    
T  9218349 tcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggcataaggttaatggagaagcatcct 9218250  T
Q  316 tgga 319  Q
    ||||    
T  9218249 tgga 9218246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 9200036 - 9199730
Alignment:
Q  13 gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg 112  Q
    ||||||||||||||||||||||| || || || || |||||| | ||||| || || |||||| |||||||||| || | |||||| | ||  || ||||    
T  9200036 gagaaaagtgatgtttatagctttggagtggttcttgcagagcttctaacaggtgacaaacctctttcttttaacaggcaagaagaaaccattagtcttg 9199937  T
Q  113 caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc 212  Q
    | || ||||| || |||||||||| | |  || |  | | ||| | | |||||||||| |||||| ||||||| |||||| | ||||||||||| |||||    
T  9199936 ctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaaggaggttgc 9199837  T
Q  213 tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcac 312  Q
    ||||||||| |||||||| || ||||||| ||| || ||||||||||| ||||  ||||| ||||||||| | || ||  |||||||||||||||||||     
T  9199836 tattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggtataaggttaatggagaagcat 9199737  T
Q  313 ccttgga 319  Q
    |||||||    
T  9199736 ccttgga 9199730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 9155731 - 9155425
Alignment:
Q  13 gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg 112  Q
    |||||||||||||| |||||||| || |||||||| || ||| | || || || || |||||| | ||||||||||| ||||||||||  |  || ||||    
T  9155731 gagaaaagtgatgtctatagctttggagtagtgcttgcggagcttctgacaggagataaacctctatcttttaataggccagaagagagtattagtcttg 9155632  T
Q  113 caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc 212  Q
    |||| ||||| || |||||||||| | |  ||    | | ||||| | ||||||||||||| || |||||||| ||||||||||||||||| || |||||    
T  9155631 caatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtatcttaaatgatgaaaacaaggaggagattaaagaggttgc 9155532  T
Q  213 tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcac 312  Q
    |||||| |||||| |||| ||  |||||  ||| |||||||||||||| ||||| ||| | ||||||||| | || ||  |||||||||||||||| ||     
T  9155531 tattctggcagcacggtgtttacgacttcgaggtgaggaaagacctagtatgaaggaaatagctatggagttggatggtataaggttaatggagaaacat 9155432  T
Q  313 ccttgga 319  Q
    |||||||    
T  9155431 ccttgga 9155425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 1815821 - 1815515
Alignment:
Q  13 gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg 112  Q
    |||||||||||||| |||||||| || ||||| || |  ||| | |||||||||||||||||| ||| ||||  ||| || |||||||  ||||| ||||    
T  1815821 gagaaaagtgatgtatatagctttggagtagttcttgtggagctgctaacgggggagaaacctttttgttttggtaggccggaagagagaagaagtcttg 1815722  T
Q  113 caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc 212  Q
    | |  ||||| |||||||| || | | || || |||||| ||||||| |||||| |||| | | |||||| || |||||  | | ||| | ||| || ||    
T  1815721 ctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagtgatcatggaggtggc 1815622  T
Q  213 tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcac 312  Q
    | ||||||| || |  || |||||||||| ||| ||||||||||| |||||||| ||||||||||||||  | |||||  | ||||||||||| ||||||    
T  1815621 tgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatggataagcac 1815522  T
Q  313 ccttgga 319  Q
     ||||||    
T  1815521 tcttgga 1815515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 1843215 - 1843518
Alignment:
Q  16 aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa 115  Q
    ||||||||||| |||||||| || ||||| || | |||| | |||||||||||||||||| ||| ||||  ||| || |||||||  ||||| |||||||    
T  1843215 aaaagtgatgtctatagctttggagtagttcttgtagagttgctaacgggggagaaacctttttgttttggtaggccggaagagagaagaagtcttgcaa 1843314  T
Q  116 ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat 215  Q
    |  | ||  ||||||| || | | |  || |||||| ||||||| |||||| |||| | | |||||| || |||||  | ||||| ||||| || ||| |    
T  1843315 tgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctgt 1843414  T
Q  216 tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcaccct 315  Q
    |||||| || | ||| |||||||||| ||| || |||||||| |||||||| ||||||||||||||  | |||||  | ||||||||| | |||||| ||    
T  1843415 tcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactct 1843514  T
Q  316 tgga 319  Q
    ||||    
T  1843515 tgga 1843518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 1868824 - 1869127
Alignment:
Q  16 aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa 115  Q
    ||||||||||| |||||||| || ||||| || | |||| | || ||||||||||||||| ||| ||||  ||| || ||||| |  ||||| |||||||    
T  1868824 aaaagtgatgtctatagctttggagtagttcttgtagagttgctgacgggggagaaacctttttgttttggtaggccggaagaaagaagaagtcttgcaa 1868923  T
Q  116 ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat 215  Q
    | || ||  ||||||| || | | |  || |||| | ||||||| |||||| |||| | | |||||| || |||||  | ||||| ||||| || ||| |    
T  1868924 tgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctgt 1869023  T
Q  216 tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcaccct 315  Q
    |||||| || | ||| |||||||||| ||| || |||||||| |||||||| ||||||||||||||  | |||||  | ||||||||| | |||||| ||    
T  1869024 tcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactct 1869123  T
Q  316 tgga 319  Q
    ||||    
T  1869124 tgga 1869127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 1857226 - 1857529
Alignment:
Q  16 aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa 115  Q
    ||||||||||| |||||||| || ||||| || |  ||| | || ||||||||||||||| ||| ||||  ||| || ||||| |  ||||| ||||| |    
T  1857226 aaaagtgatgtctatagctttggagtagttcttgtggagttgctgacgggggagaaacctttttgttttggtaggccggaagaaagaagaagtcttgcta 1857325  T
Q  116 ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat 215  Q
    | || ||  ||||||| || | | || || |||| | ||||||| |||||| |||| | | |||||| || |||||  | ||||| ||||| || ||| |    
T  1857326 tgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctgt 1857425  T
Q  216 tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagagggcttaaggttaatggagaagcaccct 315  Q
    |||||| || | ||| |||||||||| ||| || |||||||| |||||||| ||||||||||||||  | |||||  | ||||||||| | |||||| ||    
T  1857426 tcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactct 1857525  T
Q  316 tgga 319  Q
    ||||    
T  1857526 tgga 1857529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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