View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8200_low_1 (Length: 907)

Name: NF8200_low_1
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8200_low_1
NF8200_low_1
[»] chr5 (9 HSPs)
chr5 (1-450)||(3380338-3380787)
chr5 (807-893)||(2692694-2692780)
chr5 (658-738)||(2692545-2692625)
chr5 (77-156)||(8867006-8867086)
chr5 (232-361)||(3380315-3380444)
chr5 (533-659)||(40230907-40231035)
chr5 (1-77)||(2904779-2904858)
chr5 (658-733)||(2678954-2679029)
chr5 (8-53)||(8644490-8644535)
[»] chr4 (2 HSPs)
chr4 (478-660)||(16899505-16899687)
chr4 (478-660)||(18348020-18348202)
[»] chr3 (1 HSPs)
chr3 (478-660)||(13236289-13236471)
[»] chr1 (2 HSPs)
chr1 (482-657)||(6352268-6352442)
chr1 (521-657)||(10404067-10404203)
[»] scaffold1079 (1 HSPs)
scaffold1079 (478-660)||(512-691)
[»] chr2 (1 HSPs)
chr2 (555-660)||(42203278-42203382)
[»] scaffold0002 (2 HSPs)
scaffold0002 (571-658)||(197865-197952)
scaffold0002 (579-658)||(256308-256387)
[»] chr8 (1 HSPs)
chr8 (96-130)||(41718873-41718907)
[»] chr7 (1 HSPs)
chr7 (451-480)||(10412115-10412144)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 3380787 - 3380338
Alignment:
Q  1 gtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctcacacatatgtttgatatcggaatacgtagaaaccggtaacaattttt 100  Q
    ||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  3380787 gtcaatgttttgttttagttttgaaagtgagaggatgcaatgatttccttctc-cacatatgtttgatatcggaatacgtagaaactggtaacaattttt 3380689  T
Q  101 taaaat-gaagtaattgaatgtaaacaaatgtgtcggtggtcttgttctctaaattacacacctaggcatgacagaaagattttggaaagaaaacaaaag 199  Q
     ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3380688 aaaaatagaagtaattgaatgtaaacaaatgtgccggtggtcttgttctctaaattacacacctaggcatgacagaaagattttggaaagaaaacaaaag 3380589  T
Q  200 aagggaattcaatgactttcttcgctgtcaaaacacgctccaaggaagttctacagctgttgatctgcgcgcagccgtgaatttcatgaggccaggcgtg 299  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  3380588 aagggaattcaatgactttcttcgctgtcaaaacatgctccaaggaagttctacagctgttgatctgcacccagccgtgaatttcatgaggccaggcgtg 3380489  T
Q  300 acagacagttttggccactgtttaaatacgcccaggcgtattttacacggtccaaggtagttctgaagctgttgatatgcacccaggcgtcaattgcatg 399  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3380488 acagacagttttggccactgtttaaatacacccaggtgtattttacacggtccaaggtagttctgaagctgttgatatgcacccaggcgtcaattgcatg 3380389  T
Q  400 aggccagacgtgatagagaagattgggcactgttcaaatacgcccaggcgt 450  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3380388 aggccaggcgtgatagagaagattgggcactgttcaaatacgcccaggcgt 3380338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 807 - 893
Target Start/End: Original strand, 2692694 - 2692780
Alignment:
Q  807 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgtcgtactggaatgctcccgtttgttttttatgatacttttg 893  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2692694 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgccgtactggaatgctcccgtttgttttttatgatacttttg 2692780  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 658 - 738
Target Start/End: Original strand, 2692545 - 2692625
Alignment:
Q  658 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggtgtata 738  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2692545 cagttagcaacagctttattttcaaattcacctttcaagcaaggagctccaaacggttatgtcagctttagaaggtgtata 2692625  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 8867086 - 8867006
Alignment:
Q  77 acgtagaaaccggtaacaattttttaaaat-gaagtaattgaatgtaaacaaatgtgtcggtggtcttgttctctaaatta 156  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  8867086 acgtagaaaccggtaacattttttaaaaatagaagtaattgaatgtaaacaaatgtgtcggtggccgtgttctctaaatta 8867006  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 232 - 361
Target Start/End: Complemental strand, 3380444 - 3380315
Alignment:
Q  232 acacgctccaaggaagttctacagctgttgatctgcgcgcagccgtgaatttcatgaggccaggcgtgacagacagttttggccactgtttaaatacgcc 331  Q
    ||||| ||||||| ||||||  |||||||||| ||| | ||| ||| |||| ||||||||||||||||| ||| |   |||| ||||||| |||||||||    
T  3380444 acacggtccaaggtagttctgaagctgttgatatgcacccaggcgtcaattgcatgaggccaggcgtgatagagaagattgggcactgttcaaatacgcc 3380345  T
Q  332 caggcgtattttacacggtccaaggtagtt 361  Q
    |||||||| |||||||| ||||||||||||    
T  3380344 caggcgtagtttacacgctccaaggtagtt 3380315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 533 - 659
Target Start/End: Original strand, 40230907 - 40231035
Alignment:
Q  533 tattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaata-tttacagacaaaagtattcggttattggg-aa 630  Q
    ||||| |||||||||| |||||||| ||||||||||||||||| ||| |  ||| |||||||   || |||| ||||||||||||| |||||||||| ||    
T  40230907 tattcttattgagactagaactcatcgggaagaaaatagatttgtgagttcaatgaaatatgtggtattttatagacaaaagtatttggttattgggaaa 40231006  T
Q  631 aaaatcaatatacttttaatgtcgaatca 659  Q
    |||||||||| |||||||| |||||||||    
T  40231007 aaaatcaatacacttttaacgtcgaatca 40231035  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2904779 - 2904858
Alignment:
Q  1 gtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc--acacatatgttt-gatatcggaata 77  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||||||||   ||||||||||| ||||||||||||    
T  2904779 gtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgtttggatatcggaata 2904858  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 658 - 733
Target Start/End: Original strand, 2678954 - 2679029
Alignment:
Q  658 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggt 733  Q
    |||||| |||| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  2678954 cagttatcaactgcattatttgcgaattcacctttcaagcaaggagttccaaatggttatgtcagcttaagaaggt 2679029  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 8644535 - 8644490
Alignment:
Q  8 ttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 53  Q
    ||||||||  ||||||||||||| ||| ||||||||||||||||||    
T  8644535 ttgtgtttctgttttgaaagtgagaggttgcaatcatttccttctc 8644490  T

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Target: chr4 (Bit Score: 179; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 478 - 660
Target Start/End: Complemental strand, 16899687 - 16899505
Alignment:
Q  478 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16899687 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat 16899588  T
Q  578 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899587 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 16899505  T

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Target: chr4; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 478 - 660
Target Start/End: Complemental strand, 18348202 - 18348020
Alignment:
Q  478 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18348202 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat 18348103  T
Q  578 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 660  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18348102 gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 18348020  T

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Target: chr3 (Bit Score: 175; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 478 - 660
Target Start/End: Original strand, 13236289 - 13236471
Alignment:
Q  478 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13236289 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat 13236388  T
Q  578 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 660  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236389 gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 13236471  T

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Target: chr1 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 482 - 657
Target Start/End: Original strand, 6352268 - 6352442
Alignment:
Q  482 aattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaat 581  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6352268 aattggtgtggtagattcaaattttaatatatgaatagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaat 6352367  T
Q  582 ggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 657  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6352368 ggaataaaatatgtaatatttacagacaaaagtattc-attattgggaaaaaatcaatatacttttaatgtcgaat 6352442  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 521 - 657
Target Start/End: Complemental strand, 10404203 - 10404067
Alignment:
Q  521 aaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcgg 620  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  10404203 aaataaaactagtattggtattgagactagaaatcatagggaagaaaatagatttatgaatggaataaaatatataatatttacaaacaaaagtattcgg 10404104  T
Q  621 ttattgggaaaaaatcaatatacttttaatgtcgaat 657  Q
    |||||||||||||||||||||||||||||||||||||    
T  10404103 ttattgggaaaaaatcaatatacttttaatgtcgaat 10404067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1079 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 478 - 660
Target Start/End: Complemental strand, 691 - 512
Alignment:
Q  478 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 577  Q
    ||||||||||||||||| ||||| ||   || |||||||||||||    |||||| |||| |||||||||| ||||||||||||||||||||||||||||    
T  691 aacgaattggtgtggtatattcatatcataacatatgaacagtaag---aactagcattcttattgagactcgaactcatagggaagaaaatagatttat 595  T
Q  578 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 660  Q
    | ||||||| ||||||  | || ||||||||||||||||||||||| |||  |||||||||||||||| ||||||||||||||    
T  594 ggatggaatcaaatatatagtagttacagacaaaagtattcggttagtggtgaaaaatcaatatacttctaatgtcgaatcag 512  T

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Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 555 - 660
Target Start/End: Original strand, 42203278 - 42203382
Alignment:
Q  555 catagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcg 654  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||    
T  42203278 catatggaaaaaaatagatttatgaatggaataatatatgcaatatttacagacaaaagtgttcggttatt-gtaaaaattcaatatacttttaatgtcg 42203376  T
Q  655 aatcag 660  Q
    ||||||    
T  42203377 aatcag 42203382  T

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Target: scaffold0002 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 571 - 658
Target Start/End: Original strand, 197865 - 197952
Alignment:
Q  571 gatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 658  Q
    |||||||| ||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  197865 gatttatggatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 197952  T

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Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 658
Target Start/End: Original strand, 256308 - 256387
Alignment:
Q  579 aatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 658  Q
    |||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  256308 aatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 256387  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 41718873 - 41718907
Alignment:
Q  96 ttttttaaaatgaagtaattgaatgtaaacaaatg 130  Q
    |||||||||||||||||||||||||||| ||||||    
T  41718873 ttttttaaaatgaagtaattgaatgtaatcaaatg 41718907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 10412144 - 10412115
Alignment:
Q  451 tgttgaaatagattcggaaacggaagaaac 480  Q
    ||||||||||||||||||||||||||||||    
T  10412144 tgttgaaatagattcggaaacggaagaaac 10412115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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