View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8200_low_10 (Length: 381)

Name: NF8200_low_10
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8200_low_10
NF8200_low_10
[»] chr5 (3 HSPs)
chr5 (18-364)||(7263959-7264305)
chr5 (246-359)||(7247947-7248056)
chr5 (59-144)||(18101960-18102045)
[»] chr7 (8 HSPs)
chr7 (57-141)||(36781900-36781983)
chr7 (59-144)||(22660739-22660825)
chr7 (55-135)||(3532576-3532656)
chr7 (90-144)||(7908739-7908793)
chr7 (90-144)||(22965969-22966023)
chr7 (90-144)||(42887184-42887238)
chr7 (66-138)||(8903812-8903883)
chr7 (54-138)||(47355803-47355887)
[»] chr4 (6 HSPs)
chr4 (89-144)||(21752827-21752882)
chr4 (57-138)||(34773700-34773781)
chr4 (90-144)||(9285670-9285724)
chr4 (61-138)||(21664080-21664156)
chr4 (61-138)||(21672844-21672920)
chr4 (60-133)||(37728939-37729012)
[»] chr3 (3 HSPs)
chr3 (71-138)||(2995189-2995256)
chr3 (59-135)||(34898759-34898835)
chr3 (146-198)||(51975158-51975210)
[»] scaffold0178 (1 HSPs)
scaffold0178 (57-138)||(4320-4401)
[»] scaffold0119 (1 HSPs)
scaffold0119 (50-144)||(1029-1123)
[»] chr8 (3 HSPs)
chr8 (90-144)||(10199753-10199807)
chr8 (54-144)||(17467272-17467361)
chr8 (90-144)||(30942610-30942664)
[»] chr6 (2 HSPs)
chr6 (50-144)||(26669670-26669764)
chr6 (160-205)||(9302620-9302665)
[»] chr2 (4 HSPs)
chr2 (54-144)||(1244563-1244653)
chr2 (90-144)||(30474206-30474260)
chr2 (142-199)||(21874934-21874993)
chr2 (55-135)||(44857226-44857306)
[»] chr1 (6 HSPs)
chr1 (90-144)||(21884605-21884659)
chr1 (146-199)||(19866552-19866605)
chr1 (146-198)||(1721217-1721269)
chr1 (59-135)||(11215003-11215079)
chr1 (90-138)||(16110037-16110085)
chr1 (59-135)||(18467190-18467266)
[»] scaffold0039 (1 HSPs)
scaffold0039 (59-144)||(101830-101915)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 7263959 - 7264305
Alignment:
Q  18 aatccatcattctcttggttagaatattccgcttgagtcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcga 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||| ||    
T  7263959 aatccatcattctcttggttagaatattccgcttgagtccccgtgagcatagctcagctgatagggatatgcattattatatgcagtgtcggaagtttga 7264058  T
Q  118 accccaaacactccacttatttacctttttcaccttaaaaatggtgaattttagccattagacaacttgacaaaaagaaaaagaatatcccgcttgaatt 217  Q
    | |||||||||| |||||||||||||||||||| ||||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7264059 atcccaaacacttcacttatttacctttttcactttaaaaattatgaattctagccattagacaacttaacaaaaagaaaaagaatatcccgcttgaatt 7264158  T
Q  218 ttagttctgcaatgaattaccgatatccttcctttactcataatggaaatgtaacttgatctctatatatatgtttacttctcgcatgagctataagatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7264159 ttagttctgcaatgaattaccgatatccttcctttactcataatggaaatgtaacttgatctctatatatatgtttacttctcacatgagctataagatt 7264258  T
Q  318 tttagctaggcttattgttgatttagtttctactaagagtgtgacta 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7264259 tttagctaggcttattgttgatttagtttctactaagagtgtgacta 7264305  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 7247947 - 7248056
Alignment:
Q  246 ttcctttactcataatggaaatgtaacttgatctctatatatatgtttacttctcgcatgagctataagatttttagctaggcttattgttgatttagtt 345  Q
    |||||||| ||||||||||||||||||||||||||||||    ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |     
T  7247947 ttcctttattcataatggaaatgtaacttgatctctata----tgtttacttcttgcatgagctatgagaattttagctaggcttattgttgatttattg 7248042  T
Q  346 tctactaagagtgt 359  Q
    || |||||||||||    
T  7248043 tccactaagagtgt 7248056  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 18102045 - 18101960
Alignment:
Q  59 cgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    ||||||||||| || | |||||| || || ||||||||||||||| | | |  |||||||||||| |||| ||||||||| |||||    
T  18102045 cgtgagcatagctcggttgatagagacatgtattattatatgcaggggccggagttcgaaccccagacaccccacttattcacctt 18101960  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 36781983 - 36781900
Alignment:
Q  57 ctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttac 141  Q
    ||||||||||||| ||   ||||||||| || ||||||||||||||| |||||| |||||||||||||| || ||||||||||||    
T  36781983 ctcgtgagcatagctcgattgatagggacatgtattattatatgcagggtcgga-gttcgaaccccaaataccccacttatttac 36781900  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 22660739 - 22660825
Alignment:
Q  59 cgtgagcatagttcagctgatagggata-tatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||||| ||| ||||||| |  ||| ||||||| || | | | |||||||||||||||||| |||||||||||||||    
T  22660739 cgtgagcatagttcagttgacagggataatgcattgttatatgtaggggccggggttcgaaccccaaacaccccacttatttacctt 22660825  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 3532576 - 3532656
Alignment:
Q  55 tcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccactt 135  Q
    ||||||||| | |||||||| || |||||||||    || ||||||||| | | |||||||||||||||||||||||||||    
T  3532576 tcctcgtgatcttagttcagttggtagggatattgcataatatatgcaggggccgaggttcgaaccccaaacactccactt 3532656  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 7908739 - 7908793
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| | | |||||||||||||||||||| | ||||||| |||||    
T  7908739 attattatatgcagaggctgaggttcgaaccccaaacaccctacttattcacctt 7908793  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 22966023 - 22965969
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| | | ||||||||||||||| |||| ||||||||| |||||    
T  22966023 attattatatgcaggggccgaggttcgaaccccagacaccccacttattcacctt 22965969  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 42887184 - 42887238
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| | | ||||||||||||||  |||| |||||||||||||||    
T  42887184 attattatatgcaggggctgaggttcgaaccccggacaccccacttatttacctt 42887238  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 8903883 - 8903812
Alignment:
Q  66 atagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    ||||||||| ||||||||||||  ||| ||||||||||  |||| ||||||||||||| ||||  ||||||||    
T  8903883 atagttcagttgatagggatatgcattgttatatgcaggatcgg-ggttcgaaccccagacacatcacttatt 8903812  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 47355803 - 47355887
Alignment:
Q  54 gtcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    |||||||||| |||| ||||| ||| ||||||||  ||| |||||||||| | | | ||||||||||||| |||  |||||||||    
T  47355803 gtcctcgtgaacataattcagatgacagggatatgcattgttatatgcaggggccggggttcgaaccccagacatcccacttatt 47355887  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 21752827 - 21752882
Alignment:
Q  89 tattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    ||||||||||||||| | | | |||| |||||||||||||||||||||||||||||    
T  21752827 tattattatatgcaggggctggggtttgaaccccaaacactccacttatttacctt 21752882  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 34773781 - 34773700
Alignment:
Q  57 ctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    |||||||||||||||||| |||||||   ||  |||||||||||||| | | ||||||||||||||  |||| |||||||||    
T  34773781 ctcgtgagcatagttcagttgataggacaatgcattattatatgcaggggctgaggttcgaaccccggacaccccacttatt 34773700  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 9285724 - 9285670
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| ||| | ||||||||||||| |||| ||||||||| |||||    
T  9285724 attattatatgcagggtctggggttcgaaccccagacaccccacttattaacctt 9285670  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 21664080 - 21664156
Alignment:
Q  61 tgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    ||||||||| |||| || ||||||||| ||| ||||||||||| | | |||||||||| |||| ||| ||||||||||    
T  21664080 tgagcatagctcagttggtagggatatgtataattatatgcaggggctgaggttcgaatcccagaca-tccacttatt 21664156  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 21672844 - 21672920
Alignment:
Q  61 tgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    ||||||||| |||| || ||||||||| ||| ||||||||||| | | |||||||||| |||| ||| ||||||||||    
T  21672844 tgagcatagctcagttggtagggatatgtataattatatgcaggggctgaggttcgaatcccagaca-tccacttatt 21672920  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 37728939 - 37729012
Alignment:
Q  60 gtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccac 133  Q
    ||||||||||||||| || |||||||||  |||||||||||||| |   ||||||||||| ||  |||||||||    
T  37728939 gtgagcatagttcagttggtagggatatgcattattatatgcaggggtcgaggttcgaactccggacactccac 37729012  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 2995189 - 2995256
Alignment:
Q  71 tcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    |||| |||||||||||| ||||||||||||||| |   ||| |||||||| ||||||| |||||||||    
T  2995189 tcagttgatagggatatgtattattatatgcaggggtcgagattcgaacctcaaacaccccacttatt 2995256  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 34898835 - 34898759
Alignment:
Q  59 cgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccactt 135  Q
    ||||||| |||||||| || |||||||||    |||||||||||| | | ||||||||||||||| |||| ||||||    
T  34898835 cgtgagcttagttcagttggtagggatattgcatattatatgcaggggctgaggttcgaaccccagacaccccactt 34898759  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 51975158 - 51975210
Alignment:
Q  146 ttcaccttaaaaatggtgaattttagccattagacaacttgacaaaaagaaaa 198  Q
    |||||||||| || | ||||||||| || ||||||||||||||||||| ||||    
T  51975158 ttcaccttaataaagatgaattttaaccgttagacaacttgacaaaaaaaaaa 51975210  T

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Target: scaffold0178 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 4320 - 4401
Alignment:
Q  57 ctcgtgagcatagttcagctgatagggatatatattattatatgca-gtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    ||||||||||||| |||| |||||||   ||| ||||||||||||| | ||||| ||||||||||||  ||||||||||||||    
T  4320 ctcgtgagcatagctcagttgataggacaatacattattatatgcaggggtcgg-ggttcgaaccccggacactccacttatt 4401  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 1029 - 1123
Alignment:
Q  50 ttgagtcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||| ||||||||||| |||| || |||||| ||  || |||||||| || | | | ||||||||||||| |||| ||||||||| |||||    
T  1029 ttgagtccccgtgagcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcacctt 1123  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 10199807 - 10199753
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| | | | |||||||||||||||||| ||||||||| |||||    
T  10199807 attattatatgcaggggccggggttcgaaccccaaacaccccacttattcacctt 10199753  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 17467272 - 17467361
Alignment:
Q  54 gtcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    ||||| |||||||||  |||| || |||||||||| |||||||||||||| | | | ||||||||||||  |||| ||||||||| |||||    
T  17467272 gtccttgtgagcataactcagttggtagggatatacattattatatgcaggggccg-ggttcgaaccccggacaccccacttattcacctt 17467361  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 30942664 - 30942610
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| | | | |||||||||||| ||||| |||||||||||||||    
T  30942664 attattatatgcaggggccggggttcgaaccccgaacaccccacttatttacctt 30942610  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 26669764 - 26669670
Alignment:
Q  50 ttgagtcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||| ||||||||||| |||| || |||||| ||  || |||||||| || | | | ||||||||||||| |||| ||||||||| |||||    
T  26669764 ttgagtccccgtgagcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcacctt 26669670  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 9302620 - 9302665
Alignment:
Q  160 ggtgaattttagccattagacaacttgacaaaaagaaaaagaatat 205  Q
    ||||||||||||||||||||| || ||||||||| |||| ||||||    
T  9302620 ggtgaattttagccattagactacctgacaaaaaaaaaatgaatat 9302665  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 1244563 - 1244653
Alignment:
Q  54 gtcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    ||||||||||||||||||||| ||  ||||| ||| |||  ||||||||| |  || ||||||||||||  |||| ||||||||| |||||    
T  1244563 gtcctcgtgagcatagttcagttggcagggacatacattgctatatgcaggggtgggggttcgaaccccggacaccccacttattcacctt 1244653  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 30474260 - 30474206
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| | | ||||||||||||||| |||| ||||||||| |||||    
T  30474260 attattatatgcaggggccgaggttcgaaccccagacaccccacttattcacctt 30474206  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 21874993 - 21874934
Alignment:
Q  142 ctttttcaccttaaaaatggtgaattttagc--cattagacaacttgacaaaaagaaaaa 199  Q
    |||||||||||| ||||||||||||| ||||  || ||| | ||||||||||||||||||    
T  21874993 ctttttcaccttcaaaatggtgaattctagccacactaggctacttgacaaaaagaaaaa 21874934  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 44857306 - 44857226
Alignment:
Q  55 tcctcgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccactt 135  Q
    ||||||||||| ||| |||| || |||||||||    |||||||||||| | | ||||||||||||||  |||||||||||    
T  44857306 tcctcgtgagcttagctcagttggtagggatattgcatattatatgcaggggccgaggttcgaaccccggacactccactt 44857226  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 21884605 - 21884659
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    |||||||||||||| | | ||||||||||||||| |||| ||||||||| |||||    
T  21884605 attattatatgcaggggccgaggttcgaaccccagacaccccacttattcacctt 21884659  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 19866552 - 19866605
Alignment:
Q  146 ttcaccttaaaaatggtgaattttagccattagacaacttgacaaaaagaaaaa 199  Q
    ||||||||||||| |||||||| |||||| || || |||||||||||| |||||    
T  19866552 ttcaccttaaaaaaggtgaattctagccactaaactacttgacaaaaaaaaaaa 19866605  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 1721217 - 1721269
Alignment:
Q  146 ttcaccttaaaaatggtgaattttagccattagacaacttgacaaaaagaaaa 198  Q
    ||||||||||||| |||||||| ||||| |||| | |||||||||||| ||||    
T  1721217 ttcaccttaaaaaaggtgaattctagccgttaggctacttgacaaaaaaaaaa 1721269  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 11215003 - 11215079
Alignment:
Q  59 cgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccactt 135  Q
    ||||||| ||| |||| || |||||||||    |||||||||||| | | ||||||||||||||| |||||||||||    
T  11215003 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggctgaggttcgaaccccagacactccactt 11215079  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 16110085 - 16110037
Alignment:
Q  90 attattatatgcagtgtcggaggttcgaaccccaaacactccacttatt 138  Q
    |||||||||||||| |   ||||||||||||||||| ||||||||||||    
T  16110085 attattatatgcaggggttgaggttcgaaccccaaagactccacttatt 16110037  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 18467266 - 18467190
Alignment:
Q  59 cgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccactt 135  Q
    ||||||||||| |||| || |||||||||    |||||||||||| | | | ||||||||||||| |||||||||||    
T  18467266 cgtgagcatagctcagttggtagggatattgcatattatatgcaggggctggggttcgaaccccagacactccactt 18467190  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 101830 - 101915
Alignment:
Q  59 cgtgagcatagttcagctgatagggatatatattattatatgcagtgtcggaggttcgaaccccaaacactccacttatttacctt 144  Q
    ||||||||||| ||||||| ||||   ||  |||||||||||||| | | | |||||||||||||||||  ||||||||| |||||    
T  101830 cgtgagcatagctcagctggtaggataatgcattattatatgcaggggccggggttcgaaccccaaacatcccacttattcacctt 101915  T

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