View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_12 (Length: 370)
Name: NF8200_low_12
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 24 - 356
Target Start/End: Complemental strand, 11127663 - 11127314
Alignment:
| Q |
24 |
gtgtctagtgtccgacatgtgtctgtatcacacatcaattaattccgg-----------------cagtgcttcatagttaagacctcttactgtttcta |
106 |
Q |
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| T |
11127663 |
gtgtctagtgtccgacatgtgtcagtaccacacatcaattaattccggtatggacgtgttcatgtcagtgcttcatagttaagacctcttactgtttcta |
11127564 |
T |
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| Q |
107 |
agtttcttttctcattgtttatattgatttctactttgtaattatttgtttgctgtttaatgcttgtctttatcaatctgatgctacaggatattaagtt |
206 |
Q |
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| T |
11127563 |
agtttcttttctcagtgtttttattgatttctactttgtaattatttgtttgctgtttaatgcttgtctttatcaatctgatgctacaggatattaagtt |
11127464 |
T |
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| Q |
207 |
gcctgatgttaaaaaagccgatgcttctaccacacggttatgtaaattggatcttgaatttgataannnnnnnaaatccgctccttatttcttggaggag |
306 |
Q |
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| T |
11127463 |
gcctgatgttaaaaaagccgatgcttctacgacacggttatgtaaattggatcttgaatttgataatttttttaaatccgctccttatttcttggaggag |
11127364 |
T |
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| Q |
307 |
aaggcagaattgaagggtatggattcaattccctttacatgatatatatt |
356 |
Q |
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| T |
11127363 |
aaggcagaattgaagggtatggattcaattccctttacatgatatatatt |
11127314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 7025262 - 7025192
Alignment:
| Q |
286 |
gctccttatttcttggaggagaaggcagaattgaagggtatggattcaattccctttacatgatatatatt |
356 |
Q |
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| T |
7025262 |
gctccttatttcttggaggagaaggcagaattgaagggtatggattcaattgcctttacatgatatatatt |
7025192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 7025417 - 7025336
Alignment:
| Q |
137 |
ctactttgtaattatttgtttgctgtttaatgcttgtctttatcaatctgatgctacaggatattaagttgcctgatgttaa |
218 |
Q |
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|||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
7025417 |
ctaccttgtaattatctattttctgtttaatgcttgtctttatcaatctgatgctacaggatattgatttgcctgatgttaa |
7025336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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