View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_13 (Length: 356)
Name: NF8200_low_13
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 43941249 - 43941577
Alignment:
| Q |
18 |
caccaaatatgaaaatcgagagagaaattatgagtcatataaaccttaagccaccactatgtaatgaaatttcaccccgttaacaattttagtgatagtc |
117 |
Q |
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| T |
43941249 |
caccaaatatgaaaatcgagagagaaaatatgagtcatataaaccttaagccaccactatgtaatgaaatttcaccccgttaacaattttagtgatagcc |
43941348 |
T |
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| Q |
118 |
gattctttgttttgaaagatcttaatgttgtgttcctttcaaataatccaagttccaaccaaataatttgaagacagatgcaaatgtcctttcgaaaaaa |
217 |
Q |
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| T |
43941349 |
gattctttgttttgaaagatcttaatgttgtgttcctttcaaataatccaagttccaaccaaataatttgaagacagatgcaaatgtcctttcgaaaaaa |
43941448 |
T |
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| Q |
218 |
tggttgtcaccaaactgtgtagcatgcatgacaatttcagatggaggcgaactagaaat-cctagccactttgaaatgaatgaccaaacatctctgaaaa |
316 |
Q |
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| T |
43941449 |
tagttgtcaccaaactgtgtagcatgcatgacaatttcagatggaggcgcactagaaatccctaaccactttgaaatgaatgatcaaacatctctgaaaa |
43941548 |
T |
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| Q |
317 |
gttatatatagtacaaaataaatgattct |
345 |
Q |
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| T |
43941549 |
gttatatatagtacaaaataaatgattct |
43941577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 30687935 - 30687827
Alignment:
| Q |
55 |
tataaaccttaagccaccactatgtaatgaaatttcaccccgttaacaattttagtgatagtcgattctttgttttgaaagatcttaatgttgtgttcct |
154 |
Q |
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| T |
30687935 |
tataaaccttaagccaccattatg-aataaaatttcaccttgtcaacaatttcaatgatagttgattctttattttgaaagatcctaaagttgcattcct |
30687837 |
T |
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| Q |
155 |
ttcaaataat |
164 |
Q |
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| | |||||| |
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| T |
30687836 |
tccgaataat |
30687827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 51839834 - 51839880
Alignment:
| Q |
118 |
gattctttgttttgaaagatcttaatgttgtgttcctttcaaataat |
164 |
Q |
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| T |
51839834 |
gattctttgttttgaaacatctgaaagttgtgttccttccaaataat |
51839880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 39435963 - 39436073
Alignment:
| Q |
57 |
taaaccttaagccaccactatgtaatgaaatttcaccccgttaacaattttagtgatagtcgattctttgttttgaaagatcttaatgttgtgttccttt |
156 |
Q |
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|||||||||||||||||| | | | |||||||||||| ||||||||||| | |||||| |||| |||||||| |||| || | |||||||||||| |
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| T |
39435963 |
taaaccttaagccaccaccagg-attgaaatttcaccatgttaacaatttcaatgatagctgattttttgtttttaaagctcctgcagttgtgttccttc |
39436061 |
T |
|
| Q |
157 |
caaataatccaa |
168 |
Q |
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| T |
39436062 |
caaataatccaa |
39436073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 47727627 - 47727460
Alignment:
| Q |
55 |
tataaaccttaagccaccactatgtaatgaaatttcaccccgttaacaattttagtgatagtcgattctttgttttgaaagatcttaatgttgtg---tt |
151 |
Q |
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|||||||||||||| ||||||||| |||| || ||||||| | |||||||| | |||||| |||||||||||| ||||||| ||| |||||| || |
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| T |
47727627 |
tataaaccttaagcaaccactatg-aatggaagttcaccctatcaacaatttcaatgatagcaaattctttgttttaaaagatcctaaagttgtgtcctt |
47727529 |
T |
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| Q |
152 |
cctttcaaataatccaa----gttccaaccaaataatttgaagacagatgcaaatgtcctttcgaaaaa |
216 |
Q |
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|||| ||||||||||| | | |||||||||||||||||| || ||| |||||||| ||||||| |
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| T |
47727528 |
ccttctaaataatccaattacttgctaaccaaataatttgaagagaggtgcggatgtccttccgaaaaa |
47727460 |
T |
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