View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_14 (Length: 350)
Name: NF8200_low_14
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 9338253 - 9338576
Alignment:
| Q |
5 |
gagtatcgtttgagacaaccaagatgccccacacattgcctttaatctggtcttactcgagcaaactaagcatattgagatcgaccgccattttatttgt |
104 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
9338253 |
gagtatcgtttgagacaaccaagatgccctacacattgcctttaatctagtctttctcgagcaaactaagcatattgagatcgatcgtcattttatttgt |
9338352 |
T |
|
| Q |
105 |
gagaagattatgtatggtgaaattggcatttcttttgttggttttattgatcaatcaacacatatcttcacgatgtctcttcgaggaccaatgatcactt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||| |
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| T |
9338353 |
gagaagattatgtatggtgaaattggcatttcttttgttggttttaatgatcaatcaacacatatcttcacaatgtctcttcaagtaccaatgatcactt |
9338452 |
T |
|
| Q |
205 |
acacatgtgacaaacttgatgcatcttatttgtacattgcagttagacagggagtgttgagatatgcgtaataaataatattattgatttgagatattaa |
304 |
Q |
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| T |
9338453 |
gcatatgtgacaaacttgatgcatcttatttgtacgttgcagttagccagggagtgttgagatatgcgtaataaataatattactgatttgagatattaa |
9338552 |
T |
|
| Q |
305 |
ctctctta-ttatgtaaattttcc |
327 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
9338553 |
ctctcttatttatgtaaattttcc |
9338576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 278
Target Start/End: Original strand, 17726842 - 17727116
Alignment:
| Q |
4 |
ggagtatcgtttgagacaaccaagatgccccacacattgcctttaatctggtcttactcgagcaaactaagcatattgagatcgaccgccattttatttg |
103 |
Q |
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|||||||| |||| ||||| |||| |||| ||||||||||| ||||| ||||| | |||| ||||||||||||||||||||| | ||||||||| | |
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| T |
17726842 |
ggagtatcatttgcgacaatcaagcagccctacacattgcctctaatccagtctttcatgagcgaactaagcatattgagatcgattgtcattttattcg |
17726941 |
T |
|
| Q |
104 |
tgagaagattatgtatggtgaaattggcatttcttttgttggttttattgatcaatcaacacatatcttcacgatgtctcttcgaggaccaatgatcact |
203 |
Q |
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|||||| ||||||| ||||||||||| | |||||||||||||| || ||||||| | | |||||||||||| ||||||||||||||||| ||||||| |
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| T |
17726942 |
tgagaaaattatgtctggtgaaattgctacttcttttgttggttctaatgatcaactagccgatatcttcacgaagtctcttcgaggaccaaggatcact |
17727041 |
T |
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| Q |
204 |
tacacatgtgacaaacttgatgcatcttatttgtacattgcagttagacagggagtgttgagatatgcgtaataa |
278 |
Q |
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|||| ||||||||| |||||||||| | ||||||| | ||| | || ||||||||||||||||||||||||| |
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| T |
17727042 |
tacatatgtgacaagcttgatgcatatgatttgtatgctccagcttgagggggagtgttgagatatgcgtaataa |
17727116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 31838271 - 31837998
Alignment:
| Q |
5 |
gagtatcgtttgagacaaccaagatgccccacacattgcctttaatctggtcttactcgagcaaactaagcatattgagatcgaccgccattttatttgt |
104 |
Q |
| |
|
||||||| |||| ||||| ||| |||| ||||||||||| ||||| ||||| | |||||||||||||||||||||||||| | ||||||||| || |
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| T |
31838271 |
gagtatcatttgtgacaatcaaccagccctacacattgcctctaatccagtctttcatgagcaaactaagcatattgagatcgattgtcattttattcgt |
31838172 |
T |
|
| Q |
105 |
gagaagattatgtatggtgaaattggcatttcttttgttggttttattgatcaatcaacacatatcttcacgatgtctcttcgaggaccaatgatcactt |
204 |
Q |
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||||| ||||||| ||||||||||| | |||||||||||||| || ||||||| | | |||||||||||| ||||||||||||| ||| |||||||| |
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| T |
31838171 |
gagaaaattatgtctggtgaaattgctacttcttttgttggttctaatgatcaactagccgatatcttcacgaagtctcttcgaggatcaaggatcactt |
31838072 |
T |
|
| Q |
205 |
acacatgtgacaaacttgatgcatcttatttgtacattgcagttagacagggagtgttgagatatgcgtaataa |
278 |
Q |
| |
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||| ||||||||| |||||||||| | ||||||| | ||| | || ||||||||||||||||||||||||| |
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| T |
31838071 |
acatatgtgacaagcttgatgcatatgatttgtatgctccagcttgagggggagtgttgagatatgcgtaataa |
31837998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 13041515 - 13041789
Alignment:
| Q |
5 |
gagtatcgtttgagacaaccaagatgccccacacattgcctttaatctggtcttactcgagcaaactaagcatattgagatcgaccgccattttatttgt |
104 |
Q |
| |
|
||||||| |||| ||||| |||| |||| ||||||||||| ||||| ||||| | |||| ||||||||||||||||||||| | ||||||||| || |
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| T |
13041515 |
gagtatcatttgtgacaatcaagcagccctacacattgcctctaatccagtctttcatgagcgaactaagcatattgagatcgattgtcattttattcgt |
13041614 |
T |
|
| Q |
105 |
gagaagattatgtatggtgaaattggcatttcttttgttggttttattgatcaatcaacacatatcttcacgatgtctcttcgaggaccaatgatcactt |
204 |
Q |
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||||| ||||||| ||||||||||| | |||||||||||||| || ||||||| | | |||||||||||| ||||||||||||||||| |||||||| |
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| T |
13041615 |
gagaaaattatgtctggtgaaattgctacttcttttgttggttctaatgatcaactagccgatatcttcacgaagtctcttcgaggaccaaggatcactt |
13041714 |
T |
|
| Q |
205 |
acacatgtgacaaacttgatgcatctta-tttgtacattgcagttagacagggagtgttgagatatgcgtaataa |
278 |
Q |
| |
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||| ||||||||| |||||||||| | | |||||| | ||| | || ||||||||||||||||||||||||| |
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| T |
13041715 |
acatatgtgacaagcttgatgcatatgattttgtatgctccagcttgagggggagtgttgagatatgcgtaataa |
13041789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 30591945 - 30591666
Alignment:
| Q |
5 |
gagtatcgtttgagacaaccaagatgccccacacattgcctttaatctggtcttactcgagcaaactaagcatattgagatcgaccgccattttatttgt |
104 |
Q |
| |
|
||||||| |||| ||||| |||| |||| ||||||||||| ||||| ||||| | |||| ||||||||||||||||||||| | ||||||||| || |
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| T |
30591945 |
gagtatcatttgtgacaatcaagcagccctacacattgcctctaatccagtctttcatgagcgaactaagcatattgagatcgattgtcattttattcgt |
30591846 |
T |
|
| Q |
105 |
gagaagattatgtatggtgaaattggcatttcttttgttggtt------ttattgatcaatcaacacatatcttcacgatgtctcttcgaggaccaatga |
198 |
Q |
| |
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||||| ||||||| ||||||||||| | |||||||||||||| || ||||||| | | |||||||||| | ||||||||||||||||| || |
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| T |
30591845 |
gagaaaattatgtctggtgaaattgctacttcttttgttggttctaatagtaatgatcaactagccgatatcttcacaaagtctcttcgaggaccaagga |
30591746 |
T |
|
| Q |
199 |
tcacttacacatgtgacaaacttgatgcatcttatttgtacattgcagttagacagggagtgttgagatatgcgtaataa |
278 |
Q |
| |
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|||||| || ||||||||| |||||||||| | ||||||| | ||| | || ||||||||||||||||||||||||| |
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| T |
30591745 |
tcacttgcatatgtgacaagcttgatgcatatgatttgtatgctccagcttgaaggggagtgttgagatatgcgtaataa |
30591666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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