View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8200_low_16 (Length: 329)
Name: NF8200_low_16
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 22712599 - 22712915
Alignment:
| Q |
1 |
tattgaagttttgttcatggtcggcctgaaaactttgattccaacttgcttcgacattgacgggcaagacatgttattggcatgtgtttactggacgaag |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22712599 |
tattgaagttttgttcatggtctgcctgaaaactttgattccaacttgcttcgacattgacgggcaagacatgttattggcatgtgtttactggacgaag |
22712698 |
T |
|
| Q |
101 |
acggagcttttgtgttagccaaaactctttgctttactcctttgtgtcttgtggatgtcggtgaagcgttaggattatttcatgttttagaatgacttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22712699 |
acggagcttttgtgttagccaaaactctttgctttactcctttgtgtcttgtggatgtcggtgaagcgttaggattatttcatgttttagaatgacttag |
22712798 |
T |
|
| Q |
201 |
tgacatgcagtttgataaagtggactttgtgcacaactcaaaacgatgacatgcaccttcaacagtaggtgtgtagatgatacagggtttggcaatatct |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22712799 |
tgacatgcagtttgataaagtggacttcgtgcacaactcaaaacgatgacatgcaccttcaatagtaggtgtgtagatgatacagggtttggcaatatct |
22712898 |
T |
|
| Q |
301 |
caaggaatatctctgct |
317 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
22712899 |
caaggaatatctttgct |
22712915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 26534319 - 26534208
Alignment:
| Q |
131 |
gctttactcctttgtgtcttgtggatgtcggtgaagcgttaggattatttcatgttttagaatgacttagtgacatgcagtttgataaagtggactttgt |
230 |
Q |
| |
|
||||||||||||| | || |||||| || ||||||||| ||||||||||||||| ||| ||| | |||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
26534319 |
gctttactccttt-tatcatgtggaagttggtgaagcgctaggattatttcatgctttggaaaggcttagtgatatgcagtttgataacgtggattttgt |
26534221 |
T |
|
| Q |
231 |
gcacaactcaaaa |
243 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
26534220 |
gctcgactcaaaa |
26534208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 25471876 - 25471766
Alignment:
| Q |
108 |
ttttgtgttagccaaaactctttgctttactcctttgtgtcttgtggatgtcggtgaagcgttaggattatttcatgttttagaatgacttagtgacatg |
207 |
Q |
| |
|
||||||| | || |||||||| |||||||||| || ||||| |||| |||||||||||||| ||||||||||||||| ||| |||| || ||||| ||| |
|
|
| T |
25471876 |
ttttgtgctggcaaaaactctatgctttactcgttggtgtcctgtgaatgtcggtgaagcgctaggattatttcatgctttgtaatggctgagtgatatg |
25471777 |
T |
|
| Q |
208 |
cagtttgataa |
218 |
Q |
| |
|
|||| |||||| |
|
|
| T |
25471776 |
cagtctgataa |
25471766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 25827663 - 25827531
Alignment:
| Q |
85 |
tgtttactggacgaagacggagcttttgtgttagccaaaactctttgctttactcctttgtgtcttgtggatgtcggtgaagcgttaggattatttcatg |
184 |
Q |
| |
|
||||||| |||||||| || | ||||||| | || |||||||| |||||||||| || |||| | || |||||||||||||| ||||||||||| ||| |
|
|
| T |
25827663 |
tgtttacgcgacgaagatggggattttgtgctggcaaaaactctatgctttactcgttgatgtcctttgaatgtcggtgaagcgctaggattattt-atg |
25827565 |
T |
|
| Q |
185 |
ttttagaatgacttagtgacatgcagtttgataa |
218 |
Q |
| |
|
||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
25827564 |
ctttggaatgactcagtgatatgcagtctgataa |
25827531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 20265027 - 20265165
Alignment:
| Q |
78 |
tggcatgtgtttactggacgaagacggagcttttgtgttagccaaaactctttgctttactcctttgtgtcttgtggatgtcggtgaagcgttaggatta |
177 |
Q |
| |
|
||||||||| |||| ||||||||| | |||||||| || |||| || | | |||||||||| ||||||| |||||| | || |||||| ||||||||| |
|
|
| T |
20265027 |
tggcatgtgcttacgcgacgaagaccgtgcttttgttttggccagaattatgtgctttactcgtttgtgttctgtggacgacgatgaagcattaggatta |
20265126 |
T |
|
| Q |
178 |
tttcatgttttagaatgacttagtgacatgcagtttgat |
216 |
Q |
| |
|
|| |||| |||||| |||||||||| ||| |||||||| |
|
|
| T |
20265127 |
ttccatgctttagattgacttagtgttatggagtttgat |
20265165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 20244707 - 20244793
Alignment:
| Q |
130 |
tgctttactcctttgtgtcttgtggatgtcggtgaagcgttaggattatttcatgttttagaatgacttagtgacatgcagtttgat |
216 |
Q |
| |
|
|||||||||| ||||||| |||||| ||| ||||||| || ||||||| |||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
20244707 |
tgctttactcgtttgtgttctgtggacgtcagtgaagcattgagattattccatgctttagaatgacttagtgatatggagtttgat |
20244793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 20248745 - 20248831
Alignment:
| Q |
130 |
tgctttactcctttgtgtcttgtggatgtcggtgaagcgttaggattatttcatgttttagaatgacttagtgacatgcagtttgat |
216 |
Q |
| |
|
|||||||||| ||||||| |||||| ||| ||||||| || ||||||| |||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
20248745 |
tgctttactcgtttgtgttctgtggacgtcagtgaagcattgagattattccatgctttagaatgacttagtgatatggagtttgat |
20248831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University