View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_2 (Length: 762)
Name: NF8200_low_2
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 696; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 14 - 746
Target Start/End: Complemental strand, 28642819 - 28642087
Alignment:
| Q |
14 |
tggacatcatttgcaagatattacaaaggatcgtatagaaatattgcaaaaagaattgaaaatcatagaggcttaacaattagacaaaattagatcacag |
113 |
Q |
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| T |
28642819 |
tggacatcatttgcaagatattacaaaggatcgtatagaaatattgcaaaaagaattgaaaatcatagaggcttaacaattagacaaaattagatcacag |
28642720 |
T |
|
| Q |
114 |
ctatctaaatcagttccttattctcaggaagttttcttgacaaaaacaaaatgaacattgtnnnnnnntatggaatagaaagctatgaacacacacgagc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28642719 |
ctatctaaatcagttccttattctcaggaagttttcttgacaaaaacaaaatgaacattgtaaaaaaatatggaatagaaagctatgaacacacacgagc |
28642620 |
T |
|
| Q |
214 |
tctttgtccctctctttcttccaagccagcaattaaagaattttcatctctttcagctaaacatcttttatatggaacaaaccctcttccagatttctta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28642619 |
tctttgtccctctctttcttccaagccagcaattaaagaattttcatctctttcagctaaacatcttttatatggaacaaaccctcttccagatttctta |
28642520 |
T |
|
| Q |
314 |
aggacaactccttcctgacgatgtttttgagtttgagaatcatcggtatctgatgagttgttcttgctttgattttccatatcacagactgattcggtat |
413 |
Q |
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| T |
28642519 |
aggacaactccttcctgacgatgtttttgagtttgagaatcatcggtatctgatgagttgttcttgctttgattttccatatcacagactgattcggtat |
28642420 |
T |
|
| Q |
414 |
tagaaccagtgcaagaactttcctcctctcttgttattaccttcaaacaaggtctaagaggcacaggattaagaatttgatgattgcatggcatgaggtg |
513 |
Q |
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| T |
28642419 |
tagaaccagtgcaagaactttcctcctctcttgttattaccttcaaacaaggtctaagaggcacaggattaagaatttgatgattgcatggcatgaggtg |
28642320 |
T |
|
| Q |
514 |
gaaagctggaaggccttggtacaaactccataatggtaaagttgcgcactcgctgacatatggactctccttcagctgttccatgctgctcacttgagct |
613 |
Q |
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| T |
28642319 |
gaaagctggaaggccttggtacaaactccataacggtaaagttgcgcactcgctgacatatggactctccttcggccgttccatgctgctcacttgagct |
28642220 |
T |
|
| Q |
614 |
ccatcaggtgtacagatgcctagtgataattgtgtatcaagtggctctgatacctctttttggccaaccttctcaacatcctccatttcattagacttga |
713 |
Q |
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| T |
28642219 |
ccatcaggtgtacagatgcctagtgataattgtatatcaagtggctctgatacctctttttggccaaccttctcaacatcctccatttcattagacttga |
28642120 |
T |
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| Q |
714 |
tagttattaacttagtattttcgtcatcatcct |
746 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28642119 |
tagttattaacttagtattttcgtcatcatcct |
28642087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 19205835 - 19205773
Alignment:
| Q |
372 |
tgttcttgctttgattttccatatcacagactgattcggtattagaaccagtgcaagaacttt |
434 |
Q |
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| T |
19205835 |
tgttcttgctttgattttccatatcacaaactgattcagtattagaaccaatgcaagaacttt |
19205773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 246 - 317
Target Start/End: Complemental strand, 19205943 - 19205872
Alignment:
| Q |
246 |
ttaaagaattttcatctctttcagctaaacatcttttatatggaacaaaccctcttccagatttcttaagga |
317 |
Q |
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| T |
19205943 |
ttaaagaattttcatgtcttttagctaaatatcttttatatggtacaaaccctcttccatatttctgaagga |
19205872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 19206319 - 19206267
Alignment:
| Q |
28 |
aagatattacaaaggatcgtatagaaatattgcaaaaagaattgaaaatcata |
80 |
Q |
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|||||||||||||||||| || |||| ||||||||||||||||| ||||||| |
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| T |
19206319 |
aagatattacaaaggatcataaggaaagattgcaaaaagaattgacaatcata |
19206267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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