View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_20 (Length: 314)
Name: NF8200_low_20
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 31586942 - 31587219
Alignment:
| Q |
18 |
gggcaaacccagctcaagaaaaccattctctgtgacgcattttcacaaacatgttacgggtattacaataacaaggaaaaaattaactttagaagataat |
117 |
Q |
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| T |
31586942 |
gggcgaacccagctcaagaaaaccattctctgtgacgcattttcacaaacatgttacgtgtttaacaataacaaggaagatattaactttagaagacaat |
31587041 |
T |
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| Q |
118 |
atatattatacaaagtaaaataagaaagagaagataatgttttgtaaattggaaatgctaattatgctttgaataaagtgtttggaacttgggaagagat |
217 |
Q |
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| T |
31587042 |
atatattatacaaagtaaaataagaaaaagaatataatgttttgtaaattggaaatgctaattatgctttgaataa--tttttgggagat-ttaagagat |
31587138 |
T |
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| Q |
218 |
ataccagttgttgtgtttggtaacgatgatattatgataattttgtgtctatgggaacgtgtttgattctactgaaccacattcat |
303 |
Q |
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| T |
31587139 |
ataccagttgttgtgtttggcaacgatgatatt---ataattt--tgtctatgaggacgtgtttgattcttctgaaccacattcat |
31587219 |
T |
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