View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8200_low_21 (Length: 286)

Name: NF8200_low_21
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8200_low_21
NF8200_low_21
[»] chr6 (1 HSPs)
chr6 (16-270)||(22712215-22712469)
[»] chr1 (2 HSPs)
chr1 (215-270)||(23802613-23802668)
chr1 (217-269)||(25071642-25071694)
[»] chr4 (2 HSPs)
chr4 (215-269)||(12141786-12141840)
chr4 (217-270)||(789792-789845)
[»] chr3 (1 HSPs)
chr3 (224-270)||(47190195-47190241)
[»] chr2 (2 HSPs)
chr2 (218-264)||(11814077-11814123)
chr2 (219-269)||(14433839-14433889)
[»] chr8 (1 HSPs)
chr8 (217-261)||(8117431-8117475)
[»] chr5 (1 HSPs)
chr5 (222-270)||(15925894-15925942)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 22712469 - 22712215
Alignment:
Q  16 ctgtgtagtaattaatgaatcatagtgacatacaacattgagaattgaacattaattagactatttataaaacttggatatttcgtatataaaatgtaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22712469 ctgtgtagtaattaatgaatcatagtgacatacaacattgagaattgaacattaattagactatttacaaaacttggatatttcgtatataaaatgtaaa 22712370  T
Q  116 taatcaagctttaaatatcgactttataatgttatccaccaatcactaatgtattgattgcgttaatgtagtagctaaacttccatatgcacgtcggtgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22712369 taatcaagctttaaatatcgactttataatgttatccaccaatgactaatgtattgattgcgttaatgtagtagctagacttccatatgcacgtcggtgt 22712270  T
Q  216 cccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttc 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22712269 cccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttc 22712215  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 23802668 - 23802613
Alignment:
Q  215 tcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttc 270  Q
    ||||||||||||| |||||| ||||| ||||||||||| ||||||||||| |||||    
T  23802668 tcccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggttc 23802613  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 25071642 - 25071694
Alignment:
Q  217 ccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggtt 269  Q
    |||||||||||||||||| ||||| ||||| ||||| ||| ||||||| ||||    
T  25071642 ccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactcggtt 25071694  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 12141840 - 12141786
Alignment:
Q  215 tcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggtt 269  Q
    ||||||||||| | |||||| ||||||||||||||||| ||||||||||| ||||    
T  12141840 tcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcggtt 12141786  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 789845 - 789792
Alignment:
Q  217 ccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttc 270  Q
    |||||||||||||||||| ||||| ||||| ||||| ||| ||||||| |||||    
T  789845 ccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactcggttc 789792  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 47190195 - 47190241
Alignment:
Q  224 gtcatttggttcagagtatctctcttcaaactcgagaaacttggttc 270  Q
    ||||||||||| ||||| ||||||||||| ||||||||||| |||||    
T  47190195 gtcatttggttgagagtttctctcttcaacctcgagaaactcggttc 47190241  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 11814123 - 11814077
Alignment:
Q  218 cgagaagtcatttggttcagagtatctctcttcaaactcgagaaact 264  Q
    ||||| ||||||||||| ||||| ||||||||||| |||||||||||    
T  11814123 cgagaggtcatttggttgagagtttctctcttcaacctcgagaaact 11814077  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 14433839 - 14433889
Alignment:
Q  219 gagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggtt 269  Q
    ||||||||| |||||| ||||| ||||||||||| ||||||||||| ||||    
T  14433839 gagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtt 14433889  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 8117475 - 8117431
Alignment:
Q  217 ccgagaagtcatttggttcagagtatctctcttcaaactcgagaa 261  Q
    |||||||||||||||| | ||| | ||||||||||||||||||||    
T  8117475 ccgagaagtcatttggctgagaatttctctcttcaaactcgagaa 8117431  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 15925942 - 15925894
Alignment:
Q  222 aagtcatttggttcagagtatctctcttcaaactcgagaaacttggttc 270  Q
    ||||||||||||| |||| | |||||||||| ||||||||||| |||||    
T  15925942 aagtcatttggttgagagaaactctcttcaacctcgagaaactcggttc 15925894  T

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