View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_22 (Length: 283)
Name: NF8200_low_22
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 41653561 - 41653822
Alignment:
| Q |
1 |
tgttttggccacaggaagctgggacaaaaccattaagtatgcatattcattctttttattc---------------gtccaaagagtcttgggtcatttc |
85 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||| ||||||| |
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| T |
41653561 |
tgttttggccacaggaagctgggacaaaaccattaagcatgcatattcattcttttcattcagttaccgtacgtacgtctaaagagtattgggtc----- |
41653655 |
T |
|
| Q |
86 |
acaaattattttgtgtttattaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagac |
185 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41653656 |
-----ttattttatgtttgttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagac |
41653750 |
T |
|
| Q |
186 |
atcctctcatggttgtaggaactgctgataggaatctcattgtcttcaacttgcagaatcctcaggtcttat |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41653751 |
atcctctcatggttgtaggaactgctgataggaatcttattgtcttcaacttgcagaatcctcaggtcttat |
41653822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 28818183 - 28818036
Alignment:
| Q |
105 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtagg |
204 |
Q |
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|||||||||||||||||||||| || |||||||||||||| ||||||||||||| || | ||||||| |||||||||||||| |||||||| || |
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| T |
28818183 |
ttaggtattgggatactaggcaatccaacccagtgcatactcaacaactccctgatcgatgttatacaatgtcagtgagacatcctctgatggttgtggg |
28818084 |
T |
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| Q |
205 |
aactgctgataggaatctcattgtcttcaacttgcagaatcctcaggt |
252 |
Q |
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| T |
28818083 |
aactgccgataggaatctgattgtcttcaacttgcagaatcctcaggt |
28818036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 1463665 - 1463518
Alignment:
| Q |
105 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtagg |
204 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||| || || |||||||| || | ||||| | ||||| |||| ||||||||| ||||| || || |
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| T |
1463665 |
ttaggtattgggatacaaggcagccaaatccagtgcacacacaacaactcccagagcgctgctatgcaatgacagtgaaacatcctctgatggtagttgg |
1463566 |
T |
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| Q |
205 |
aactgctgataggaatctcattgtcttcaacttgcagaatcctcaggt |
252 |
Q |
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||||||||||| ||| | ||||| | ||| ||||| ||||||||||| |
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| T |
1463565 |
cactgctgatagaaatattattgtttacaatttgcaaaatcctcaggt |
1463518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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