View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8200_low_28 (Length: 253)

Name: NF8200_low_28
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8200_low_28
NF8200_low_28
[»] chr8 (6 HSPs)
chr8 (71-193)||(23813889-23814011)
chr8 (76-193)||(28930935-28931052)
chr8 (104-193)||(28931443-28931532)
chr8 (104-191)||(23813410-23813497)
chr8 (139-193)||(22475697-22475751)
chr8 (115-193)||(22475030-22475108)
[»] chr4 (5 HSPs)
chr4 (71-193)||(54009663-54009785)
chr4 (104-191)||(54009184-54009271)
chr4 (139-193)||(40618120-40618174)
chr4 (117-179)||(19329587-19329649)
chr4 (134-179)||(29729622-29729667)
[»] chr2 (6 HSPs)
chr2 (71-193)||(30874705-30874827)
chr2 (104-194)||(30875217-30875307)
chr2 (116-179)||(43805705-43805768)
chr2 (155-193)||(23175267-23175305)
chr2 (155-193)||(23386999-23387037)
chr2 (155-193)||(23586524-23586562)
[»] chr5 (1 HSPs)
chr5 (104-193)||(31658217-31658306)
[»] chr3 (1 HSPs)
chr3 (193-234)||(38212527-38212568)
[»] chr7 (1 HSPs)
chr7 (155-193)||(48625072-48625110)
[»] chr1 (2 HSPs)
chr1 (135-193)||(48578329-48578387)
chr1 (117-178)||(45817915-45817976)
[»] chr6 (2 HSPs)
chr6 (134-179)||(8172162-8172207)
chr6 (134-179)||(8172847-8172892)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 23813889 - 23814011
Alignment:
Q  71 gtcataacacgtgggtttttgggtgtttttaccttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcatt 170  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  23813889 gtcagaacacgtgggtttttgggtgttttcaccttaaattggagccttttaatcttaaccattcattttaatccaaaggttgataattatttctatcatt 23813988  T
Q  171 ctcacataacttattcattctca 193  Q
    ||| || ||||||||||||||||    
T  23813989 ctcccagaacttattcattctca 23814011  T

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Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 28931052 - 28930935
Alignment:
Q  76 aacacgtgggtttttgggtgtttttaccttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcac 175  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28931052 aacatgtgggtttttgggtgttttcaccttaaattggagccttttaatcttaaccattcattttaatccaaaggttgataattattcctatcattctcac 28930953  T
Q  176 ataacttattcattctca 193  Q
    |||| |||| ||||||||    
T  28930952 ataatttatccattctca 28930935  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 28931443 - 28931532
Alignment:
Q  104 ttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataacttattcattctca 193  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  28931443 ttaaattggagccttttaatcttaaccattcattttaatccaaaggttgataattattcctatcattctcacataatttatccattctca 28931532  T

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Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 23813497 - 23813410
Alignment:
Q  104 ttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataacttattcattct 191  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23813497 ttaaattggagccttttaatcttaaccatttattttaatccaaaggttgataattattcctatcattctcacataacttatccattct 23813410  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 22475697 - 22475751
Alignment:
Q  139 taatccaaaggttgataattattcctatcattctcacataacttattcattctca 193  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||  |||||||||    
T  22475697 taatccaaaggtccataatcattcctatcattctcacataactttgtcattctca 22475751  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 22475108 - 22475030
Alignment:
Q  115 ccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataacttattcattctca 193  Q
    |||||||||||  | |||  ||| |||||||||||   ||||| ||||||||||||||||||||||||  |||||||||    
T  22475108 ccttttaatctctaccatcaattctaatccaaaggcccataatcattcctatcattctcacataactttgtcattctca 22475030  T

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Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 54009663 - 54009785
Alignment:
Q  71 gtcataacacgtgggtttttgggtgtttttaccttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcatt 170  Q
    |||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  54009663 gtcagaacacgtgggtttttggatgttttcaccttaaattggaaccttttaatcttaaccattcattttaatctaaaggttgataattattcctatcatt 54009762  T
Q  171 ctcacataacttattcattctca 193  Q
    |||||||||||||||||||||||    
T  54009763 ctcacataacttattcattctca 54009785  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 54009271 - 54009184
Alignment:
Q  104 ttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataacttattcattct 191  Q
    |||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||    
T  54009271 ttaaattggaaccttttaatcttaaccattcattttaatccaaagattgataattattcctatcattctcgcataacttatccattct 54009184  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 40618120 - 40618174
Alignment:
Q  139 taatccaaaggttgataattattcctatcattctcacataacttattcattctca 193  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||  |||||||||    
T  40618120 taatccaaaggtccataattattcctatcattctcacgtaactttgtcattctca 40618174  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 19329649 - 19329587
Alignment:
Q  117 ttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataa 179  Q
    |||||||||| | |||| |||| |||||||||| |||||||| ||| ||||||||||| ||||    
T  19329649 ttttaatcttgaccattaatttaaatccaaaggctgataattgttcttatcattctcatataa 19329587  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 29729667 - 29729622
Alignment:
Q  134 cattttaatccaaaggttgataattattcctatcattctcacataa 179  Q
    |||||||||| || ||||| || |||||||||||||||||||||||    
T  29729667 cattttaatctaacggttgttatttattcctatcattctcacataa 29729622  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 30874827 - 30874705
Alignment:
Q  71 gtcataacacgtgggtttttgggtgtttttaccttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcatt 170  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||    
T  30874827 gtcagaacacgtgggtttttggatgttttcaccttaaattggagccttttaatcttaaccattcattttaatctaaaggttgataattattcttatcatt 30874728  T
Q  171 ctcacataacttattcattctca 193  Q
    |||||||||||||| ||||||||    
T  30874727 ctcacataacttatccattctca 30874705  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 30875217 - 30875307
Alignment:
Q  104 ttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataacttattcattctcaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30875217 ttaaattggagccttttaatcttaaccattcattttaatccaaaggttgataattattcctatcattctcacataacttatccattctcaa 30875307  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 43805705 - 43805768
Alignment:
Q  116 cttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataa 179  Q
    |||| ||||||| |||| |||||||||||||| | || ||||||||| |||| |||||||||||    
T  43805705 ctttaaatcttagtcatccattttaatccaaaagctgttaattattcttatcgttctcacataa 43805768  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 23175267 - 23175305
Alignment:
Q  155 aattattcctatcattctcacataacttattcattctca 193  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  23175267 aattattcctatcattctcacataacatatccattctca 23175305  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 23387037 - 23386999
Alignment:
Q  155 aattattcctatcattctcacataacttattcattctca 193  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  23387037 aattattcctatcattctcacataacatatccattctca 23386999  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 23586524 - 23586562
Alignment:
Q  155 aattattcctatcattctcacataacttattcattctca 193  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  23586524 aattattcctatcattctcacataacatatccattctca 23586562  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 31658306 - 31658217
Alignment:
Q  104 ttaaattggagccttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacataacttattcattctca 193  Q
    |||||||| |||||||||||||||  |||||||||||||  || ||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  31658306 ttaaattgaagccttttaatcttagccattcattttaatttaatggttgataattattcttatcattctcacataacatatccattctca 31658217  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 38212527 - 38212568
Alignment:
Q  193 aaccctaatctctatttcttttgtaggaatctacctgctatg 234  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  38212527 aaccctaatctctattccttttgtaggaatctacctgctatg 38212568  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 48625110 - 48625072
Alignment:
Q  155 aattattcctatcattctcacataacttattcattctca 193  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  48625110 aattattcctatcattctcacataacatatccattctca 48625072  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 48578329 - 48578387
Alignment:
Q  135 attttaatccaaaggttgataattattcctatcattctcacataacttattcattctca 193  Q
    ||||| ||| || |||||| | ||||||||||||||||||||||| ||| |||||||||    
T  48578329 attttgatctaatggttgagatttattcctatcattctcacataagttactcattctca 48578387  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 45817915 - 45817976
Alignment:
Q  117 ttttaatcttaatcattcattttaatccaaaggttgataattattcctatcattctcacata 178  Q
    |||||||||| | |||| |||| ||| |||||| |||||||||||| || ||||||||||||    
T  45817915 ttttaatcttgaccattaatttaaattcaaaggctgataattattcttaacattctcacata 45817976  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 8172207 - 8172162
Alignment:
Q  134 cattttaatccaaaggttgataattattcctatcattctcacataa 179  Q
    |||||||||| || ||||| || |||||||||||||||||||||||    
T  8172207 cattttaatctaacggttgttatttattcctatcattctcacataa 8172162  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 8172847 - 8172892
Alignment:
Q  134 cattttaatccaaaggttgataattattcctatcattctcacataa 179  Q
    |||||||||| || ||||| || |||||||||||||||||||||||    
T  8172847 cattttaatctaacggttgttatttattcctatcattctcacataa 8172892  T

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