View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_3 (Length: 514)
Name: NF8200_low_3
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_3 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 14460559 - 14460462
Alignment:
| Q |
7 |
gagatgaagaagatgaaatttgaccaaaaagatggcaagaagatagatgcaattctattaaaaaaggaaggtggtttactgcactaaccaagtctgtt |
104 |
Q |
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| T |
14460559 |
gagatgaaggagatgaaatttggccaaaaagatggcaagaagatagatgcaattctattaaaaaaggaaggtggtttactgcactaaccaagtctgtt |
14460462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 14495281 - 14495378
Alignment:
| Q |
7 |
gagatgaagaagatgaaatttgaccaaaaagatggcaagaagatagatgcaattctattaaaaaaggaaggtggtttactgcactaaccaagtctgtt |
104 |
Q |
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| T |
14495281 |
gagatgaaggagatgaaatttggccaaaaagatggcaagaagatagatgcaattctattaaaaaaggaaggtggtttactgcactaaccaagtctgtt |
14495378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 14453909 - 14453848
Alignment:
| Q |
268 |
ataaaatagataaatgtaataggtattttgaatcagtcattctacattgtttaataatagat |
329 |
Q |
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| T |
14453909 |
ataaaattgataaatacaataggaatgttgaatcagtcattctacattgtttagtaatagat |
14453848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 14470871 - 14470957
Alignment:
| Q |
18 |
gatgaaatttgaccaaaaagatggcaagaagatagatgcaattctattaaaaaaggaaggtggtttactgcactaaccaagtctgtt |
104 |
Q |
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| T |
14470871 |
gatggaatatgaccaaaaagtttgcaagaagatagatgcaatttcattaaagaaggtagctggttcagtgtactaacccaatctgtt |
14470957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 500
Target Start/End: Complemental strand, 14459679 - 14459650
Alignment:
| Q |
471 |
ttgtaacaacacaacagttgtaacaaagtg |
500 |
Q |
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| T |
14459679 |
ttgtaacaacacaacagttgtaacaaagtg |
14459650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 14456059 - 14455971
Alignment:
| Q |
17 |
agatgaaatttgaccaaaaagatggcaagaagatagatgcaattctattaaaaaaggaaggtggtttactgcactaaccaagtctgttt |
105 |
Q |
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| T |
14456059 |
agatggaatatgaccaaaaagctgacagaaatgtagatgcaattctattaaaaaaggaaattggcttaatgaactaacccagtttgttt |
14455971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 9373 - 9319
Alignment:
| Q |
260 |
ttagaggtataaaatagataaatgtaataggtattttgaatcagtcattctacat |
314 |
Q |
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| T |
9373 |
ttagacgtacaaaatagataaatgaaataggtgtttggaatcagacattctacat |
9319 |
T |
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