View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8200_low_32 (Length: 249)

Name: NF8200_low_32
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8200_low_32
NF8200_low_32
[»] chr3 (2 HSPs)
chr3 (1-244)||(30261222-30261463)
chr3 (201-239)||(8769375-8769413)
[»] chr6 (1 HSPs)
chr6 (201-244)||(29444187-29444230)
[»] chr5 (2 HSPs)
chr5 (201-232)||(5147413-5147444)
chr5 (201-244)||(15898625-15898668)
[»] chr2 (2 HSPs)
chr2 (201-244)||(37528988-37529031)
chr2 (197-229)||(36748310-36748342)
[»] chr4 (2 HSPs)
chr4 (201-239)||(5499349-5499387)
chr4 (90-123)||(35594674-35594707)
[»] chr1 (3 HSPs)
chr1 (201-239)||(25983551-25983589)
chr1 (201-239)||(35622671-35622709)
chr1 (201-234)||(24131318-24131351)
[»] chr7 (1 HSPs)
chr7 (195-244)||(37264459-37264508)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 30261222 - 30261463
Alignment:
Q  1 attgttcagtaccaaacaaaggtgatttgaagatcacagtccacaaaccacttccaattcactgcaatcattttttaaaacgcacagaggatacaaagat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  30261222 attgttcagtaccaaataaaggtgatttgaagatcacagtccacagaccacttccaattcactgcaatcattttttaaaacgca--gaggatacaaagat 30261319  T
Q  101 tatgatctcatatagtaaacacagcaccatactagaaagagagggtactcatgacaaccgacaatgaccaatgttatcaaacagttgtactcttgttaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261320 tatgatctcatatagtaaacacagcaccatactagaaagagagggtactcatgacaaccgacaatgaccaatgttatcaaacagttgtactcttgttaac 30261419  T
Q  201 tactccctccgtcccattttaactgagtcttttgttcatctcac 244  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  30261420 tactccctccgtcccattttaactgagccttttgttcatttcac 30261463  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 8769413 - 8769375
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttgttcat 239  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  8769413 tactccttccgtcccattttaactgagttttttgttcat 8769375  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 29444230 - 29444187
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttgttcatctcac 244  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||    
T  29444230 tactccctccgttccatattaactgagtcttttgttcatttcac 29444187  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 232
Target Start/End: Original strand, 5147413 - 5147444
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttt 232  Q
    ||||||||||||||||||||||||||||||||    
T  5147413 tactccctccgtcccattttaactgagtcttt 5147444  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 15898668 - 15898625
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttgttcatctcac 244  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||    
T  15898668 tactccctccgtcccattttaaatgagtctttagttcatttcac 15898625  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 37528988 - 37529031
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttgttcatctcac 244  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||    
T  37528988 tactccctccgtcccaatttaactgagtcatttgttcatttcac 37529031  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 36748342 - 36748310
Alignment:
Q  197 taactactccctccgtcccattttaactgagtc 229  Q
    |||||||||||||||||||| ||||||||||||    
T  36748342 taactactccctccgtcccagtttaactgagtc 36748310  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 5499349 - 5499387
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttgttcat 239  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  5499349 tactccctccgtcccattttaaccgagccttttgttcat 5499387  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 35594707 - 35594674
Alignment:
Q  90 gatacaaagattatgatctcatatagtaaacaca 123  Q
    |||||||||||||| |||||||||||||||||||    
T  35594707 gatacaaagattataatctcatatagtaaacaca 35594674  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 25983551 - 25983589
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttgttcat 239  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  25983551 tactctctccgtctcattttaactgagtcttttgttcat 25983589  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 35622671 - 35622709
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttgttcat 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  35622671 tactccctccgttccattttaactaagtcttttgttcat 35622709  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 24131318 - 24131351
Alignment:
Q  201 tactccctccgtcccattttaactgagtcttttg 234  Q
    ||||||||||||||||||||||||||||| ||||    
T  24131318 tactccctccgtcccattttaactgagtcatttg 24131351  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 37264508 - 37264459
Alignment:
Q  195 gttaactactccctccgtcccattttaactgagtcttttgttcatctcac 244  Q
    ||||| |||||||||||||||||||||| |||| |||||| |||| ||||    
T  37264508 gttaattactccctccgtcccattttaagtgagccttttgctcatttcac 37264459  T

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